New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 43715945 (0.760)4 (0.070) 4/248 NT 7.8% coding (129/888 nt) PP_0358 membrane protein
?NC_002947 = 437191 52 (0.930)coding (97/888 nt) PP_0358 membrane protein

ACACGTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCTTAGGT  >  NC_002947/437014‑437306
                                                                                                                                                 |                                                                                                                                                   
acacGTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCAcc                                                                                                                                                  >  4:281035/1‑149 (MQ=255)
   cGTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCgg                                                                                                                                               <  2:62564/149‑1 (MQ=255)
    gTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGt                                                                                                                                              <  5:263602/149‑1 (MQ=255)
    gTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGt                                                                                                                                              <  6:25165/149‑1 (MQ=255)
       ggTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGa                                                                                                                                           <  4:18889/149‑1 (MQ=255)
           aGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGTCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGACCACCCGGTGGACAAt                                                                                                                                       <  2:199292/149‑1 (MQ=255)
           aGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAAt                                                                                                                                       <  2:355490/149‑1 (MQ=255)
            gCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATg                                                                                                                                      <  7:27270/149‑1 (MQ=255)
                gTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGAtct                                                                                                                                  >  5:255355/1‑149 (MQ=255)
                             aGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCgtcccggcggtggagatcattgtccaccgggt                                                                                                                     >  3:149123‑M1/1‑117 (MQ=255)
                             aGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGa                                                                                                                      <  2:124283/148‑1 (MQ=255)
                               tGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGGAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACgc                                                                                                                   <  1:258420‑M2/149‑3 (MQ=255)
                                 ccccGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACgctc                                                                                                                 <  7:50237‑M2/149‑5 (MQ=255)
                                   ccGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCgtcccggcggtggagatcattgtccaccgggtgctctg                                                                                                               <  4:149123‑M1/149‑39 (MQ=255)
                                         aGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGc                                                                                                         >  7:114778/1‑149 (MQ=255)
                                         aGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGc                                                                                                         <  1:335125/149‑1 (MQ=255)
                                             ccAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCtt                                                                                                      >  6:322167/1‑148 (MQ=255)
                                               aGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGaa                                                                                                   <  5:301579/149‑1 (MQ=255)
                                                ggATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAg                                                                                                  >  7:1303/1‑149 (MQ=255)
                                                          ccGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCgtcccggcggtggagatcattgtccaccgggtgctctggtca                                                                                                           <  2:362916‑M1/130‑43 (MQ=255)
                                                          ccGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCgtcccggcggtggagatcattgtccaccgggtgctctggtca                                                                                                           >  1:362916‑M1/1‑88 (MQ=255)
                                                              cgcgGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAg                                                                                    <  8:50237/149‑1 (MQ=255)
                                                                  ggTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGccc                                                                                <  8:319832/149‑1 (MQ=255)
                                                                         gcgcAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAgatga                                                                         >  2:319736/1‑149 (MQ=255)
                                                                         gcgcAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAgatg                                                                          <  6:255355/148‑1 (MQ=255)
                                                                           gcAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAgatgatc                                                                       >  8:197130/1‑148 (MQ=255)
                                                                           gcAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGatgatg                                                                       <  2:258420/149‑1 (MQ=255)
                                                                               ttCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGatgatg                                                                       >  4:6170/1‑145 (MQ=255)
                                                                               ttCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTa                                                                     <  3:6170/147‑1 (MQ=255)
                                                                                     ccaccaGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCAGATGATGTAGGCGCTCaa                                                            <  4:352751/149‑1 (MQ=255)
                                                                                       accaGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAg                                                           >  3:190959/1‑149 (MQ=255)
                                                                                            ccGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGATAAGGCCCCAGATGATGTAGGCGCTCAAGCCAAg                                                      >  8:302571/1‑149 (MQ=255)
                                                                                               gggTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTAt                                                   <  4:190959/149‑1 (MQ=255)
                                                                                                ggTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATg                                                  >  4:168656/1‑149 (MQ=255)
                                                                                                ggTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATg                                                  <  8:1303/149‑1 (MQ=255)
                                                                                                    tttCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCaa                                                            <  4:199878/135‑1 (MQ=255)
                                                                                                    tttCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCaa                                                            >  3:199878/1‑135 (MQ=255)
                                                                                                       ccACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATCGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCcgc                                           >  6:107726/1‑149 (MQ=255)
                                                                                                        cacaCCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCAACGCCGTGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGa                                         <  6:75728/149‑1 (MQ=255)
                                                                                                           acCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGAcg                                       >  5:17429/1‑149 (MQ=255)
                                                                                                             cAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGAcgcg                                     >  6:12724/1‑149 (MQ=255)
                                                                                                                  gcagcagcGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGTCGCGGGtac                                <  1:319736/149‑3 (MQ=255)
                                                                                                                     gcagcGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTgcg                             >  7:336322/1‑149 (MQ=255)
                                                                                                                         cGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGt                         <  8:336322/149‑1 (MQ=255)
                                                                                                                         cGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGt                         <  8:114778/149‑1 (MQ=255)
                                                                                                                         cGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCACTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGt                         >  3:318962/1‑149 (MQ=255)
                                                                                                                               gAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGtgcatgc                   <  7:197130/149‑1 (MQ=255)
                                                                                                                                        tGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACgctctggtcagcactgttcggctcgctgctgctactggtgtggaaacaccccggctggtggcgtgaactgcgcaacaacccgcgccgg                             >  1:362916‑M2/1‑42 (MQ=255)
                                                                                                                                        tGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACgctctggtcagcactgttcggctcgctgctgctactggtgtggaaacaccccggctggtggcgtgaactgcgcaacaacccgcgccgg                             <  2:362916‑M2/130‑89 (MQ=255)
                                                                                                                                        tGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCGCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCtt          >  7:237194/1‑149 (MQ=255)
                                                                                                                                          aCCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGc        <  3:168656/149‑1 (MQ=255)
                                                                                                                                            cAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACgctctggtcagcactgttcggctcgctgctgctactggtgtggaaacaccccggctggtggcgtgaactgcgcaacaacccgcgccggctgggcatcctggcactgagcgg      <  4:149123‑M2/149‑112 (MQ=255)
                                                                                                                                            cAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCt       >  5:73721/1‑148 (MQ=255)
                                                                                                                                            cAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCt       >  2:47766/1‑148 (MQ=255)
                                                                                                                                            cAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCACTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCtt      <  4:318962/149‑1 (MQ=255)
                                                                                                                                              gagCgtcccggcggtggagatcattgtccaccgggtgctctggtcagcactgttcggctcgctgctgctactggtgtggaaacaccccggctggtggcgtgaactgcgcaacaacccgcgccggctgggcatcctggcactgagcgggg    <  7:50237‑M1/149‑146 (MQ=255)
                                                                                                                                               agCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCTTAgg   <  5:322167/149‑1 (MQ=255)
                                                                                                                                                gCgtcccggcggtggagatcattgtccaccgggtgctctggtcagcactgttcggctcgctgctgctactggtgtggaaacaccccggctggtggcgtgaactccgcaacaacccgcgccggctgggcatcctggcactgagcggggca  <  1:258420‑M1/149‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
ACACGTAGGTCAGCCAGTTGCCGGCGATCAGTGCCCCGCTCAGTGCCAGGATGCCCAGCCGGCGCGGGTTGTTGCGCAGTTCACGCCACCAGCCGGGGTGTTTCCACACCAGTAGCAGCAGCGAGCCGAACAGTGCTGACCAGAGCACCCGGTGGACAATGATCTCCACCGCCGGGACGCTCTGGATTGCCTTGAAGTAGAGGGGGAAAAGGCCCCAGATGATGTAGGCGCTCAAGCCCAGTATGTACCCGCGACGCGGGTTTGCGGCGTGCATGCAGAATCCTTGCTTAGGT  >  NC_002947/437014‑437306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.