New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	821949 =	46 (0.780)	3 (0.050)	3/248	NT	6.6%	coding (1320/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	821986 =	42 (0.750)					coding (1357/2412 nt)	PP_0707	hypothetical protein

GCACCCTGCGCAAGCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAG  >  NC_002947/821801‑822092                                                                                                                                                      |                                                                                                                                                gcACCCTGCGCAAGCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTgg                                                                                                                                                 <  6:97825/149‑1 (MQ=255) gcACCCTGCGCAAGCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTgg                                                                                                                                                 <  4:313164/149‑1 (MQ=255)  cACCCTGCGCAAGCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTggg                                                                                                                                                <  3:136805/149‑1 (MQ=255)      cagcacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCa                                                                                                                                             >  3:248641‑M1/145‑149 (MQ=255)        cacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagacagggtttcgcacaggtcgccgaagaaggtGGTc                                                                                                                                              >  1:50543‑M1/143‑146 (MQ=255)         cacgacagtgcggccgatgccggccagtatggtgctggcctgcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTc                                                                                                                                              <  2:50543‑M1/4‑1 (MQ=255)          acgacagtgcggccgatgccggccagtatggtgctggcctgcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGc                                                                                                                                           <  3:198359‑M1/7‑1 (MQ=255)              gCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGa                                                                                                                                    <  3:167009/149‑1 (MQ=255)               cATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGAt                                                                                                                                   <  1:351621/149‑1 (MQ=255)               cATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGAt                                                                                                                                   >  5:109588/1‑149 (MQ=255)                        gAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCtgtg                                                                                                                           <  7:294775/148‑1 (MQ=255)                        gAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGc                                                                                                                          <  4:350643/149‑1 (MQ=255)                         aGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGcc                                                                                                                         <  1:43805/149‑1 (MQ=255)                             cccGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACt                                                                                                                     <  6:109588/149‑1 (MQ=255)                             cccGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACt                                                                                                                     >  1:237942/1‑149 (MQ=255)                              ccGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGt                                                                                                                                               <  4:216605/122‑1 (MQ=255)                              ccGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGt                                                                                                                                               >  3:216605/1‑122 (MQ=255)                                gACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGc                                                                                                                  >  6:121836/1‑149 (MQ=255)                                gACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCAGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGc                                                                                                                  >  2:220736/1‑149 (MQ=255)                                            cGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACcttct                                                                                                      >  1:79328/1‑149 (MQ=255)                                             gggCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACcttctt                                                                                                     >  2:25317/1‑149 (MQ=255)                                                cggcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCg                                                                                                   >  6:230568‑M1/103‑149 (MQ=255)                                                   aTCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGa                                                                                               >  1:39602/1‑149 (MQ=255)                                                   aTCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATCTCCT‑CACCTCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGc                                                                                                 <  7:71109/147‑1 (MQ=255)                                                    tCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                              >  7:164709/1‑149 (MQ=255)                                                    tCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                              >  7:306233/1‑149 (MQ=255)                                                           cGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGc                                                                                        <  5:121836/148‑1 (MQ=255)                                                                  ggcATCTAGCTGACGTTGATCCTGCTGGCACTGCTCACCGTCTAGCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCct                                                                                <  8:281815/147‑1 (MQ=255)                                                                  gTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAAccc                                                                                 <  6:14255/148‑1 (MQ=255)                                                                   tCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCctg                                                                               <  2:237942/149‑1 (MQ=255)                                                                   tCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCctg                                                                               <  1:317946/149‑1 (MQ=255)                                                                          gCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTCCCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACTTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGc                                                                        >  6:98900/1‑149 (MQ=255)                                                                                gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCTGCACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGa                                                                   >  1:276660/1‑149 (MQ=255)                                                                                gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCt                                                                                                                              <  3:30328/89‑1 (MQ=255)                                                                                gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCt                                                                                                                              >  4:30328/1‑89 (MQ=255)                                                                                gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                              <  2:291039/121‑1 (MQ=255)                                                                                gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGATGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                              >  1:291039/1‑121 (MQ=255)                                                                                   gATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGc                                                               >  6:175241/1‑149 (MQ=255)                                                                                   acgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACct                                                                                                         >  5:371895‑M1/68‑108 (MQ=255)                                                                                   acgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACct                                                                                                         <  6:371895‑M1/41‑1 (MQ=255)                                                                                    aTCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGcc                                                              >  3:285900/1‑149 (MQ=255)                                                                                          ctgGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGt                                                          <  8:306233/147‑1 (MQ=255)                                                                                             gCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGc                                                       <  1:25317/147‑1 (MQ=255)                                                                                               aCTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTgg                                                   >  2:244300/1‑149 (MQ=255)                                                                                                    tCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCAGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTg                                              >  7:331894/1‑149 (MQ=255)                                                                                                       ccGGCTACGTGACACTAGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGTTCAGACTGGTGATAACCTGTGCCTACTTGCTGACCACCTTCTTCTGCGACCTGTGGGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTggag                                           <  2:79328/149‑3 (MQ=255)                                                                                                         ggCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACTTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTc                                         <  5:98900/149‑1 (MQ=255)                                                                                                                tGACACTCTCCTATTTCCT‑CACCGCCAAGCTGTTGTGTGTCAGCCTGTTGATCACCTGTGCCTACTTGCTTACCACCTTCTTCGGCGACCTGTGCTAAACCCTGCTTTCGCCGCGTCAGCCCGGTGGCCTGGCACTGGCGTCGACCCTg                                  <  4:285900/149‑1 (MQ=255)                                                                                                                 gACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGt                                                          <  8:140363/124‑1 (MQ=255)                                                                                                                 gACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGt                                                          >  7:140363/1‑124 (MQ=255)                                                                                                                     cTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCt                             <  1:220736/149‑1 (MQ=255)                                                                                                                        gCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGgc                          <  8:164709/149‑1 (MQ=255)                                                                                                                          cTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGTCCTGgcgc                        <  3:288195/149‑1 (MQ=255)                                                                                                                             tttCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTc                     <  2:39602/149‑1 (MQ=255)                                                                                                                                  t‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCAt                >  4:198359/1‑149 (MQ=255)                                                                                                                                  t‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCAt                >  5:11275/1‑149 (MQ=255)                                                                                                                                     aCCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCa              <  1:244300/149‑1 (MQ=255)                                                                                                                                     aCCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCAGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATc               <  8:331894/148‑1 (MQ=255)                                                                                                                                                 ttgtGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAg  >  3:154399/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                GCACCCTGCGCAAGCATGACCTGGAGCGCCCGACGGGCCTGGCCGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTGCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAG  >  NC_002947/821801‑822092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.