New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	821949 =	46 (0.780)	3 (0.050)	3/248	NT	6.6%	coding (1320/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	821986 =	42 (0.750)					coding (1357/2412 nt)	PP_0707	hypothetical protein

CGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTGCTGTTCCT  >  NC_002947/821844‑822134                                                                                                                                                |                                                                                                                                                      cGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACcttct                                                                                                                                                 >  1:79328/1‑149 (MQ=255)  gggCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACcttctt                                                                                                                                                >  2:25317/1‑149 (MQ=255)     cggcgcctgatggcgaggcgccaggcccagggtcgacgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCg                                                                                                                                              >  6:230568‑M1/103‑149 (MQ=255)        aTCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGa                                                                                                                                          >  1:39602/1‑149 (MQ=255)        aTCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATCTCCT‑CACCTCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGc                                                                                                                                            <  7:71109/147‑1 (MQ=255)         tCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                                                                         >  7:164709/1‑149 (MQ=255)         tCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                                                                         >  7:306233/1‑149 (MQ=255)                cGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGc                                                                                                                                   <  5:121836/148‑1 (MQ=255)                       ggcATCTAGCTGACGTTGATCCTGCTGGCACTGCTCACCGTCTAGCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCct                                                                                                                           <  8:281815/147‑1 (MQ=255)                       gTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAAccc                                                                                                                            <  6:14255/148‑1 (MQ=255)                        tCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCctg                                                                                                                          <  1:317946/149‑1 (MQ=255)                        tCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCctg                                                                                                                          <  2:237942/149‑1 (MQ=255)                               gCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTCCCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACTTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGc                                                                                                                  >  6:98900/1‑149 (MQ=255)                                     gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCTGCACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGa                                                                                                             >  1:276660/1‑149 (MQ=255)                                     gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                                                                         <  2:291039/121‑1 (MQ=255)                                     gTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGATGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGAc                                                                                                                                         >  1:291039/1‑121 (MQ=255)                                        gATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGc                                                                                                         >  6:175241/1‑149 (MQ=255)                                        acgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACct                                                                                                                                                    >  5:371895‑M1/68‑108 (MQ=255)                                        acgccagtgccaggccaccgggctgtcggggcgacagcagggtttcgcacaggtcgccgaagaaggtGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACct                                                                                                                                                    <  6:371895‑M1/41‑1 (MQ=255)                                         aTCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGcc                                                                                                        >  3:285900/1‑149 (MQ=255)                                               ctgGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGt                                                                                                    <  8:306233/147‑1 (MQ=255)                                                  gCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGc                                                                                                 <  1:25317/147‑1 (MQ=255)                                                    aCTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTgg                                                                                             >  2:244300/1‑149 (MQ=255)                                                         tCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCAG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTg                                                                                        >  7:331894/1‑149 (MQ=255)                                                            ccGGCTACGTGACACTAGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGTTCAGACTGGTGATAACCTGTGCCTACTTGCTGACCACCTTCTTCTGCGACCTGTGGGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTggag                                                                                     <  2:79328/149‑3 (MQ=255)                                                              ggCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACTTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTc                                                                                   <  5:98900/149‑1 (MQ=255)                                                                     tGACACTCTCCTATTTCCT‑CACCGCCAAGCTGTTGTGTGTCAGCCTGTTGATCACCTGTGCCTACTTGCTTACCACCTTCTTCGGCGACCTGTGCTAAACCCTG‑CTTTCGCCGCGTCAGCCCGGTGGCCTGGCACTGGCGTCGACCCTg                                                                            <  4:285900/149‑1 (MQ=255)                                                                      gACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGt                                                                                                    >  7:140363/1‑124 (MQ=255)                                                                      gACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGt                                                                                                    <  8:140363/124‑1 (MQ=255)                                                                          cTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCt                                                                       <  1:220736/149‑1 (MQ=255)                                                                             gCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGgc                                                                    <  8:164709/149‑1 (MQ=255)                                                                               cTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGTCCTGgcgc                                                                  <  3:288195/149‑1 (MQ=255)                                                                                  tttCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTc                                                               <  2:39602/149‑1 (MQ=255)                                                                                       t‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCAt                                                          >  5:11275/1‑149 (MQ=255)                                                                                       t‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCAt                                                          >  4:198359/1‑149 (MQ=255)                                                                                          aCCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCa                                                        <  1:244300/149‑1 (MQ=255)                                                                                          aCCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCAG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATc                                                         <  8:331894/148‑1 (MQ=255)                                                                                                 cgaagaaggtggtcagcaagtaggcacaggtgatcaccaggctgaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCaggcgccg                                                 >  6:230568‑M2/48‑147 (MQ=255)                                                                                                      ttgtGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAg                                            >  3:154399/1‑149 (MQ=255)                                                                                                       aggtggtcagcaagtaggcacaggtgatcaccaggctgaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGt                                                                                    <  6:371895‑M2/67‑1 (MQ=255)                                                                                                       aggtggtcagcaagtaggcacaggtgatcaccaggctgaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGt                                                                                    >  5:371895‑M2/42‑108 (MQ=255)                                                                                                                  cTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGc                                >  2:276795/1‑149 (MQ=255)                                                                                                                   tGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGc                                               <  2:287001/133‑1 (MQ=255)                                                                                                                   tGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGc                                               >  1:287001/1‑133 (MQ=255)                                                                                                                         tCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATc                         <  6:11275/149‑1 (MQ=255)                                                                                                                              tgtgCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCg                    >  8:271127/1‑149 (MQ=255)                                                                                                                                   cTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTg               >  7:142102/1‑149 (MQ=255)                                                                                                                                   cTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTg               >  2:344077/1‑149 (MQ=255)                                                                                                                                    tACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGt              >  5:176215/1‑149 (MQ=255)                                                                                                                                       ttGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGt           >  1:325096/1‑149 (MQ=255)                                                                                                                                         gctgaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGt           <  3:198359‑M2/140‑1 (MQ=255)                                                                                                                                           tgaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTGCTg       >  3:248641‑M2/6‑149 (MQ=255)                                                                                                                                            gaccACCTTCTTCGGCGACCTGTGCGAAACCCTGTCTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTg          >  1:50543‑M2/5‑146 (MQ=255)                                                                                                                                            gaccACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTg          <  2:50543‑M2/141‑1 (MQ=255)                                                                                                                                                accTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTGCTGTTCCt  >  4:100813/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                      CGGGCTGATCCCGTTCGTGATGGTCATCTGGCTGACGTTGATCCTGCTGGCACTGCTCACCGGCTACCTGACACTCGCCTATTTCCT‑CACCGCCAAGCTGTTGTGGGTCAGCCTGGTGATCACCTGTGCCTACTTGCTGACCACCTTCTTCGGCGACCTGTGCGAAACCCTG‑CTGTCGCCCCGACAGCCCGGTGGCCTGGCACTGGCGTCGACCCTGGGCCTGGCGCCTCGCCATCAGGCGCAGGCCAGCACCATACTGGCCGGCATCGGCCGCACTGTCGTGCTGTTCCT  >  NC_002947/821844‑822134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.