New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 923914	44 (0.750)	3 (0.050)	3/248	NT	6.5%	coding (1279/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 923954	44 (0.790)					coding (1239/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

GGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACT  >  NC_002947/923766‑924057                                                                                                                                                     |                                                                                                                                                gggTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGT                                                                                                                                                 <  4:50372‑M1/149‑1 (MQ=255)    tGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACAGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAg                                                                                                                                              <  7:165890/149‑1 (MQ=255)      aTCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGt                                                                                                                                            <  8:64143/149‑1 (MQ=255)                  cTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGa                                                                                                                                >  7:33422/1‑149 (MQ=255)                   tGCATCAGCTTGTCAAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGCCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACAAGGCTACCCGTGGTGAGGTCGCCGGCGATGAc                                                                                                                               >  1:75039/1‑149 (MQ=255)                     cATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCa                                                                                                                             >  2:73398/1‑149 (MQ=255)                         aGCTTGTCCAGGCCTTGCATCGCGACCTTGGCCTGCTGCCATCGGGTCAGCACATGTGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGATGTCGCCGGCGATGACCATgg                                                                                                                          <  8:68461/148‑1 (MQ=255)                          gCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATgg                                                                                                                          >  7:317836/1‑147 (MQ=255)                          gCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGa                                                                                                                        <  2:311959/149‑1 (MQ=255)                               tCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGcc                                                                                                                   >  8:10949/1‑149 (MQ=255)                                ccAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTcatcgtgatcggcgctcccatggtcatcgcc                                                                                                                  >  3:86429‑M1/1‑118 (MQ=255)                                             cgcgACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAg                                                                                                                                              <  2:342014/108‑1 (MQ=255)                                             cgcgACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAg                                                                                                                                              >  1:342014/1‑108 (MQ=255)                                                   cTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTcatcgtgatcggcgctcccatggtcatcgccggcgacctcaccacgggta                                                                                               <  6:32502‑M1/149‑51 (MQ=255)                                                   cTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCa                                                                                                >  2:104561/1‑148 (MQ=255)                                                       gCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTcatcgtgatcggcgctcccatggtcatcgccggcgacctcaccacgggtagcc                                                                                            <  4:86429‑M1/148‑54 (MQ=255)                                                        ccTTCTGCCAGCGGGTCAGCAGATGGGTCAGTTGGGCGAACGTCGCCATCATTCGCGATTAAATAATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGTCAAACACg                                                                                          <  2:75039/149‑1 (MQ=255)                                                        ccTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACg                                                                                          >  5:232044/1‑149 (MQ=255)                                                          tgctgcCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACgg                                                                                         >  6:366161/1‑148 (MQ=255)                                                                   cGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAc                                                                               <  7:10949/149‑1 (MQ=255)                                                                     ggTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAg                                                                                                                       <  4:73793/107‑1 (MQ=255)                                                                     ggTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAg                                                                                                                       >  3:73793/1‑107 (MQ=255)                                                                        cAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCt                                                                          <  8:33422/149‑1 (MQ=255)                                                                            acaTGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACAATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGt                                                                      >  2:269304/1‑149 (MQ=255)                                                                                gggTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAg                                                                  >  7:268639/1‑149 (MQ=255)                                                                                 ggTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAg                                                                  <  1:73398/148‑1 (MQ=255)                                                                                 ggTCAGGTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAg                                                                  <  3:231873/148‑1 (MQ=255)                                                                                         gggCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCAGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAg                                                          <  3:257773/148‑1 (MQ=255)                                                                                             cAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGt                                                     <  8:183768/149‑1 (MQ=255)                                                                                               aCGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTg                                                   <  8:268639/149‑1 (MQ=255)                                                                                                 ggCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACAATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGt                                                 <  1:269304/149‑1 (MQ=255)                                                                                                  gcgcCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGt                                                 >  2:219280/1‑148 (MQ=255)                                                                                                    gcCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAg                                              >  6:320204/1‑149 (MQ=255)                                                                                                     ccATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAgg                                             >  7:122754/1‑149 (MQ=255)                                                                                                       atcatTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGt                                           <  5:366161/149‑1 (MQ=255)                                                                                                       atcatTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGt                                           <  8:317836/149‑1 (MQ=255)                                                                                                              gcgATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTgcgcagg                                    >  1:219731/1‑149 (MQ=255)                                                                                                                  tGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTgcgcaggcgca                                <  2:219731/149‑1 (MQ=255)                                                                                                                     aaGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACCCGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGAGCAGGAGCAGGt                             >  7:344338/1‑149 (MQ=255)                                                                                                                     aaGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGCTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACCTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGt                             >  1:171667/1‑149 (MQ=255)                                                                                                                       gCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCTGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCATGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTg                           <  8:122754/149‑1 (MQ=255)                                                                                                                        cATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTgg                          >  4:322614/1‑149 (MQ=255)                                                                                                                              tGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGTACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTgcg                    >  8:289534/1‑149 (MQ=255)                                                                                                                                     accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGc                                                                        <  4:95622/90‑1 (MQ=255)                                                                                                                                     accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGc                                                                        >  3:95622/1‑90 (MQ=255)                                                                                                                                     accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGc             >  3:288586/1‑149 (MQ=255)                                                                                                                                         ggCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGaccacgggtagcctggtggcggcatccatgctttcatcgcgaatgatggcgccgttggcccaactgacccatgtgctgacccgctggcagcaggc          <  4:86429‑M2/148‑96 (MQ=255)                                                                                                                                         ggCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCcgcg         >  6:340812/1‑149 (MQ=255)                                                                                                                                          gCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCGGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGt        <  5:320204/149‑1 (MQ=255)                                                                                                                                           cTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGtt       <  5:340812/149‑1 (MQ=255)                                                                                                                                           cTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTAGGTGTGCGCGCAGGCCGCGtt       >  1:82722/1‑149 (MQ=255)                                                                                                                                            tACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGaccacgggtagcctggtggcggcatccatgctttcatcgcgaatgatggcgccgttggcccaactgacccatgtgctgacccgctggcagcaggccaag      <  6:32502‑M2/149‑100 (MQ=255)                                                                                                                                               ccGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTAc   >  4:328412/1‑149 (MQ=255)                                                                                                                                                cGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACt  <  6:232044/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACGTTCTGCGTCCAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACT  >  NC_002947/923766‑924057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.