New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 923914	44 (0.750)	3 (0.050)	3/248	NT	6.5%	coding (1279/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 923954	44 (0.790)					coding (1239/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

CTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCGTGCCTCTGCCTGCA  >  NC_002947/923816‑924093                                                                                                                                           |                                                                                                                                              cTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCa                                                                                                                                      >  2:104561/1‑148 (MQ=255)      ccTTCTGCCAGCGGGTCAGCAGATGGGTCAGTTGGGCGAACGTCGCCATCATTCGCGATTAAATAATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGTCAAACACg                                                                                                                                <  2:75039/149‑1 (MQ=255)      ccTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACg                                                                                                                                >  5:232044/1‑149 (MQ=255)        tgctgcCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACgg                                                                                                                               >  6:366161/1‑148 (MQ=255)                 cGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAc                                                                                                                     <  7:10949/149‑1 (MQ=255)                      cAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCt                                                                                                               <  8:33422/149‑1 (MQ=255)                          acaTGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACAATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGt                                                                                                           >  2:269304/1‑149 (MQ=255)                              gggTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAg                                                                                                      >  7:268639/1‑149 (MQ=255)                               ggTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAg                                                                                                      <  1:73398/148‑1 (MQ=255)                               ggTCAGGTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAg                                                                                                      <  3:231873/148‑1 (MQ=255)                                       gggCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCAGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAg                                                                                              <  3:257773/148‑1 (MQ=255)                                           cAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGt                                                                                         <  8:183768/149‑1 (MQ=255)                                             aCGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTg                                                                                       <  8:268639/149‑1 (MQ=255)                                               ggCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACAATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGt                                                                                     <  1:269304/149‑1 (MQ=255)                                                gcgcCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGt                                                                                     >  2:219280/1‑148 (MQ=255)                                                  gcCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAg                                                                                  >  6:320204/1‑149 (MQ=255)                                                   ccATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAgg                                                                                 >  7:122754/1‑149 (MQ=255)                                                     atcatTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGt                                                                               <  8:317836/149‑1 (MQ=255)                                                     atcatTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGt                                                                               <  5:366161/149‑1 (MQ=255)                                                            gcgATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTgcgcagg                                                                        >  1:219731/1‑149 (MQ=255)                                                                tGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTgcgcaggcgca                                                                    <  2:219731/149‑1 (MQ=255)                                                                   aaGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACCCGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGAGCAGGAGCAGGt                                                                 >  7:344338/1‑149 (MQ=255)                                                                   aaGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGCTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑CTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGt                                                                 >  1:171667/1‑149 (MQ=255)                                                                     gCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCTGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CATGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTg                                                               <  8:122754/149‑1 (MQ=255)                                                                      cATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTgg                                                              >  4:322614/1‑149 (MQ=255)                                                                            tGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGTACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTgcg                                                        >  8:289534/1‑149 (MQ=255)                                                                                   accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGc                                                                                                             <  4:95622/90‑1 (MQ=255)                                                                                   accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGc                                                                                                             >  3:95622/1‑90 (MQ=255)                                                                                   accaGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGc                                                 >  3:288586/1‑149 (MQ=255)                                                                                       ggCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGaccacgggtagcctggtggcggcatccatgctttcatcgcgaatgatggcgccgttggcccaactgacccatgtgctgacccgctggcagcaggc                                                <  4:86429‑M2/148‑96 (MQ=255)                                                                                       ggCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCcgcg                                             >  6:340812/1‑149 (MQ=255)                                                                                        gCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCGGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGt                                            <  5:320204/149‑1 (MQ=255)                                                                                         cTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGtt                                           <  5:340812/149‑1 (MQ=255)                                                                                         cTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTAGGTGTGCGCGCAGGCCGCGtt                                           >  1:82722/1‑149 (MQ=255)                                                                                          tACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGaccacgggtagcctggtggcggcatccatgctttcatcgcgaatgatggcgccgttggcccaactgacccatgtgctgacccgctggcagcaggccaag                                            <  6:32502‑M2/149‑100 (MQ=255)                                                                                             ccGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTAc                                       >  4:328412/1‑149 (MQ=255)                                                                                              cGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACt                                      <  6:232044/149‑1 (MQ=255)                                                                                                       gTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACt                             >  4:37414/1‑149 (MQ=255)                                                                                                            cGGCGATGACCATGGGAGCGCCGATCTCGATGACCAGGGGAAACACGTGACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGt                        <  2:171667/149‑1 (MQ=255)                                                                                                             ggCGATGACCATGGGAGCGCCGATCACGATGaccacgggtagcctggtggcggcatccatgctttcatcgcgaatgatggcgccgttggcccaactgacccatgtgctgacccgctggcagcaggccaaggtcgcgctgcaaggcctgg                         >  3:86429‑M2/1‑31 (MQ=255)                                                                                                              gCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGtt                                           <  4:295930/128‑1 (MQ=255)                                                                                                              gCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGtt                                           >  3:295930/1‑128 (MQ=255)                                                                                                                 aTGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGaa                   <  3:328412/149‑1 (MQ=255)                                                                                                                 aTGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGaa                   <  1:219280/149‑1 (MQ=255)                                                                                                                     ccATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCACTGTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCg                >  1:87443/1‑149 (MQ=255)                                                                                                                      cATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTCGGAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCGt               >  1:290458/1‑149 (MQ=255)                                                                                                                           gAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCGTGCctct         >  2:127377/1‑149 (MQ=255)                                                                                                                                  gATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCGTGCCTCTGCCTGCa  <  1:104561/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              CTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAAAGCATGGATGCCGCCACCAGGCTACCCGTGGTGAGGTCGCCGGCGATGACCATGGGAGCGCCGATCACGATGACCACGGCAAACACGGCACCCTGCAC‑GTTCTGCGTC‑CAGGTCACCAGGCCGTTGGTGAGGGTGCGCAGGCGCAGGTTGGTGTGCGCGCAGGCCGCGTTGTACTGGTTCCACTGCCGTTCGAAGCGTGCCTCTGCCTGCA  >  NC_002947/923816‑924093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.