New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1236861 =	44 (0.750)	7 (0.120)	6/254	NT	14.3%	coding (371/471 nt)	ybaK	Cys‑tRNAPro deacylase
	?	NC_002947	1236892 =	41 (0.720)					coding (402/471 nt)	ybaK	Cys‑tRNAPro deacylase

ATGCTGCCGGGGTAAAAAAGTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAG  >  NC_002947/1236714‑1236998                                                                                                                                                    |                                                                                                                                           ccaggagaatggcgtgcgtcgatacagttcggcgacttgacttcagaaccagagggccgcttggcggccccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTc                                                                                                                                           >  5:77473‑M1/148‑149 (MQ=255)       ccGGGGTAAAAAAGTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATg                                                                                                                                       <  4:116896/147‑1 (MQ=255)       ccGGGGTAAAAAAGTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATg                                                                                                                                       <  3:60326/147‑1 (MQ=255)       ccGGGGTAAAAAAGTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGt                                                                                                                                      <  1:369059/148‑1 (MQ=255)                    gTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGTGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGc                                                                                                                        <  1:211654/149‑1 (MQ=255)                    gTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGc                                                                                                                        <  4:357831/149‑1 (MQ=255)                      atacagttcggcgacttgacttcagaaccagagggccgcttggcggccccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑t                                                                                                                     <  7:268534‑M1/23‑1 (MQ=255)                       cGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑t                                                                                                                     <  3:172830/148‑1 (MQ=255)                          gaTGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGcc                                                                                                                 <  6:71307/149‑1 (MQ=255)                            tGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCGTACCAACAATTATTAAAGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTg                                                                                                               >  1:120393/1‑149 (MQ=255)                              gCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTgg                                                                                                              >  5:75177/1‑148 (MQ=255)                               ccGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            <  6:191204/149‑1 (MQ=255)                               ccGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            <  2:182915/149‑1 (MQ=255)                                  gacttgacttcagaaccagagggccgcttggcggccccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTg                                                                                                         >  1:307323‑M1/115‑149 (MQ=255)                                    ccGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTg                                                                                                         >  5:343735/1‑147 (MQ=255)                                         aGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTgg                                                                                                  <  5:210036/149‑1 (MQ=255)                                          ttcagaaccagagggccgcttggcggccccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            >  6:40330‑M1/107‑138 (MQ=255)                                          ttcagaaccagagggccgcttggcggccccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            <  5:40330‑M1/32‑1 (MQ=255)                                             gcgcAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCCGGAAGTGGAGTTGGCCg                                                                                               >  3:54369/1‑148 (MQ=255)                                                    gggCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTg                                                                                       >  5:362481/1‑149 (MQ=255)                                                         aCCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGc                                                                                  <  2:210712/149‑1 (MQ=255)                                                             gTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAg                                                                              <  7:121560/149‑1 (MQ=255)                                                                  cTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATAc                                                                         >  3:365224/1‑149 (MQ=255)                                                                    ggtggGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACg                                                                        >  1:100234/1‑148 (MQ=255)                                                                      ccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            <  6:301696‑M1/32‑1 (MQ=255)                                                                      ccctgttctcagcctcgaccaatcccggcaaacgtgccctgcgtatactccgccagcaccgctgcggccaactccactTCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGaa                                                                                                            >  5:301696‑M1/79‑110 (MQ=255)                                                                        ggcggcATCAGCCCGCTGTGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAggg                                                                   <  6:276680/149‑1 (MQ=255)                                                                        ggcggcATCAGCCCGCTGGGTCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAgg                                                                    <  7:284119/148‑1 (MQ=255)                                                                        ggcggcATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAggg                                                                   <  6:281833/149‑1 (MQ=255)                                                                           ggcATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCAc                                                                >  8:169966/1‑149 (MQ=255)                                                                             cATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGt                                                              >  1:336227/1‑149 (MQ=255)                                                                              aTCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGtt                                                             >  5:317785/1‑149 (MQ=255)                                                                                  gCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGtt                                                             <  8:154241/145‑1 (MQ=255)                                                                                  gCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGtt                                                             >  7:154241/1‑145 (MQ=255)                                                                                    ccGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCgg                                                       <  2:100234/149‑1 (MQ=255)                                                                                              agaagaAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCAGGGATTGGTc                                               >  4:145195/1‑147 (MQ=255)                                                                                               gaagaaGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAg                                            >  8:84872/1‑149 (MQ=255)                                                                                                aagaagCGCCTGGGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAgg                                           >  8:175124/1‑149 (MQ=255)                                                                                                                 ctatATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTATGCCGGGATTGGTCGAGGCTGAGAACAGGGGgccg                          >  2:259457/4‑149 (MQ=255)                                                                                                                        gatgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGTGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCg                   >  8:123294/1‑149 (MQ=255)                                                                                                                        gatgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGa                                             >  7:109032/1‑123 (MQ=255)                                                                                                                        gatgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGa                                             <  8:109032/123‑1 (MQ=255)                                                                                                                        gatgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGc                    <  3:145195/148‑1 (MQ=255)                                                                                                                          tgaCTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGc                 <  6:75177/149‑1 (MQ=255)                                                                                                                                ggCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTg           <  2:336227/149‑1 (MQ=255)                                                                                                                                 gcgcAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTgg          >  6:164233/1‑149 (MQ=255)                                                                                                                                   gcAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGtt        >  8:23520/1‑149 (MQ=255)                                                                                                                                       aaTTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCCCCTgttc        >  5:355690/1‑142 (MQ=255)                                                                                                                                       aaTTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGAGGGCCGCTTGGCGGCCCCCTgttc        <  6:355690/145‑4 (MQ=255)                                                                                                                                        aTTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGACACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaa   <  2:120393/149‑1 (MQ=255)                                                                                                                                        aTTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGGGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGaa   <  7:169966/149‑1 (MQ=255)                                                                                                                                         ccaactccactTCCAGGCCA‑CGCCTGCCGGCGCTGACATGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGACCTCTGGTTATgaac  <  8:268534‑M1/138‑2 (MQ=255)                                                                                                                                                 cTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGTTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCgtc                 <  6:36544/126‑3 (MQ=255)                                                                                                                                                 cTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGACGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGc                 >  5:36544/1‑126 (MQ=255)                                                                                                                                                    |                                                                                                                                           ATGCTGCCGGGGTAAAAAAGTGCGAGATGGCCGACCCGGCAGCGGCGCAGCGGGCGACCGGTTACCTGGTGGGCGGCATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGGACCTTTATTGATGACTCGGCGCAGAATTTTGCAACTATCCATGTCAGCGCCGGCAGGCG‑TGGCCTGGAAGTGGAGTTGGCCGCAGCGGTGCTGGCGGAGTATACGCAGGGCACGTTTGCCGGGATTGGTCGAGGCTGAGAACAGGGGGCCGCCAAGCGGCCCTCTGGTTCTGAAG  >  NC_002947/1236714‑1236998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.