New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1267027 =	45 (0.760)	3 (0.050)	3/254	NT	6.4%	coding (961/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1267092 =	44 (0.770)					coding (896/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP

CGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGCCAGCAGGCTCTTGCCGCTGCGGCT  >  NC_002947/1266879‑1267174                                                                                                                                                     |                                                                                                                                                    agcaggtcgaggtcggccagctcggtagcccggggtcggccaacctggccctgggtccgccgcgcagccgcagcggcaagagcctgctggccagcgacagccgcgccgcctgggccttgagcccggtacaaatcaataccagcaagtac                                                                                                                                                     <  8:337430‑M1/1‑1 (MQ=255)    tggccgacctcgacctgctcggtagcccggggtcggccaacctggccctgggtccgcagcgcagccgcagcggcaagagcctgctggccagcgacagccgcgccgcctgggccttgagcccggtacaaatcaataccagcaagtaCCAg                                                                                                                                                  <  6:92246‑M1/4‑1 (MQ=255)       ccACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCtt                                                                                                                                               >  3:89098/1‑149 (MQ=255)        cACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTg                                                                                                                                              >  1:69762/1‑149 (MQ=255)           gTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCa                                                                                                                                           >  7:270660/1‑149 (MQ=255)                 aGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAg                                                                                                                                     >  8:145049/1‑149 (MQ=255)                      gTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGc                                                                                                                                <  4:142342/149‑1 (MQ=255)                         tCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCa                                                                                                                              <  2:126744/148‑1 (MQ=255)                                       ggcCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAg                                                                                                                                     <  6:268521/127‑1 (MQ=255)                                       ggcCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAg                                                                                                                                     >  5:268521/1‑127 (MQ=255)                                              aGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGc                                                                                                          >  7:302633/1‑147 (MQ=255)                                              aGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCaa                                                                                                        <  3:132631/149‑1 (MQ=255)                                                ccATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAgg                                                                                                      <  4:89098/149‑1 (MQ=255)                                                 cATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGa                                                                                                     >  1:188833/1‑149 (MQ=255)                                                     tACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAg                                                                                                  <  7:236467/148‑1 (MQ=255)                                                        cATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCAAAATTGGCAGGCCCGGCAAGGACAGGCCg                                                                                              <  6:227653/149‑1 (MQ=255)                                                              ccAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAAcc                                                                                        <  2:149523/149‑1 (MQ=255)                                                                gcagccgcagcggcaagagcctgctggccagcgacagccgcgccgcctgggccttgagcccggtacaaatcaataccagcaagtaCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTg                                                                                      >  7:18826‑M1/86‑149 (MQ=255)                                                                gcagccgcagcggcaagagcctgctggccagcgacagccgcgccgcctgggccttgagcccggtacaaatcaataccagcaagtaCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTg                                                                                      <  8:18826‑M1/64‑1 (MQ=255)                                                                aGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGTAGGCCCGGCAAGGACAGGCCGGCAACCTg                                                                                      <  7:145049/149‑1 (MQ=255)                                                                   gccgcagcggcaagagccggcgggcctgcgacagccgcgccgcctgggccttgcgcccggtacaaatcaataccagcaagtaCCAGCTCGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTa                                                                                   >  2:102008‑M1/83‑149 (MQ=255)                                                                     gCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACt                                                                                 >  6:338146/1‑149 (MQ=255)                                                                       tCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGccc                                                                                                             <  7:129592/119‑1 (MQ=255)                                                                       tCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGccc                                                                                                             >  8:129592/1‑119 (MQ=255)                                                                          gCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTg                                                                            <  8:302633/149‑1 (MQ=255)                                                                              aCTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTAt                                                                        >  8:191555/1‑149 (MQ=255)                                                                                tGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTAtt                                                                       >  5:380544/1‑148 (MQ=255)                                                                                  ccTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGAt                                                                    >  4:304555/1‑149 (MQ=255)                                                                                    ttGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGAttt                                                                  >  1:322770/1‑149 (MQ=255)                                                                                    ttGCCGCCGCAGCTGCTAGAGGAACACGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGGAAGGACAGGCCGGCAACCTGGAACTTGCTGGGATTGAgtt                                                                  >  8:32063/1‑149 (MQ=255)                                                                                      ggcggcGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGAttt                                                                  <  4:113756/147‑1 (MQ=255)                                                                                       gcggcgCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCa                                                                                           >  4:19723/1‑121 (MQ=255)                                                                                       gcggcgCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCa                                                                                           <  3:19723/121‑1 (MQ=255)                                                                                            gcAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCggg                                                          <  8:270660/149‑1 (MQ=255)                                                                                              aGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGc                                                         >  7:45140/1‑148 (MQ=255)                                                                                                    tCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGc                                                  >  8:142233/1‑149 (MQ=255)                                                                                                     cGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGcc                                                 >  1:90197/1‑149 (MQ=255)                                                                                                         gAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAgg                                             >  3:206934/1‑149 (MQ=255)                                                                                                                 ccTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGgcggcgcgg                                     <  8:45140/149‑1 (MQ=255)                                                                                                                  cTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGgcggcgcggc                                    >  6:140041/1‑149 (MQ=255)                                                                                                                  cTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGgcggcg                                        >  4:208127/1‑145 (MQ=255)                                                                                                                  cTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGgcggcg                                        <  3:208127/145‑1 (MQ=255)                                                                                                                   agcatGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCt                                   <  7:18821/145‑1 (MQ=255)                                                                                                                      ttGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTc                                <  5:338146/149‑1 (MQ=255)                                                                                                                      ttGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTc                                <  7:191555/149‑1 (MQ=255)                                                                                                                           ggCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTg                            <  6:380544/148‑1 (MQ=255)                                                                                                                            gCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGc                          >  7:214457/1‑149 (MQ=255)                                                                                                                                    cgcgCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGCCAGCAGGc                  >  7:34570/1‑149 (MQ=255)                                                                                                                                         tgctgctCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAggcgg                                          <  1:135581/120‑1 (MQ=255)                                                                                                                                         tgctgctCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAggcgg                                          >  2:135581/1‑120 (MQ=255)                                                                                                                                                 cAGGCCAGATTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGCCAGCAGGCTCTTGCCgctgcg     >  3:191457/1‑149 (MQ=255)                                                                                                                                                    gCCAGGTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGCCAGCAGGCTCTTGCCgctgcggct  >  7:337430/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGTTGGCCACGTACAAAGTAGGTTTCGCTGCGGGCGCGGGCCGGCAGCCATTTACCATCGGCCAGGTAGCTCAGCTGACTGCCTTGGCGGCGCAGCTGCTCGAGGAACAGGTCCTGATTGTCGGCCATGACCGCGCTGCTGCTCCAGGCCAGCTTGCCATTGTAGCCGGCCAGCACAATTGGCAGGCCCGGCAAGGACAGGCCGGCAACCTGGTACTTGCTGGTATTGATTTGTACCGGGCTCAAGGCCCAGGCGGCGCGGCTGTCGCTGGCCAGCAGGCTCTTGCCGCTGCGGCT  >  NC_002947/1266879‑1267174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.