New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1612852 =	46 (0.780)	4 (0.070)	4/242	NT	9.4%	coding (649/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	1612894 =	35 (0.640)					coding (691/693 nt)	ung	uracil‑DNA glycosylase

GGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTC  >  NC_002947/1612709‑1613000                                                                                                                                                |                                                                                                                                                     caggacaccggcatcaccgaccttgaagccttggtggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCgg                                                                                                                                                 <  4:355749‑M1/6‑1 (MQ=255)  gggggCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGACGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCggg                                                                                                                                                >  2:131309/1‑149 (MQ=255)  aggacaccggcatcaccgaccttgaagccttggtggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgtgtaccccaccgcggtttctcaCAGCggg                                                                                                                                                >  6:312785‑M1/143‑149 (MQ=255)   ggacaccggcatcaccgaccttgaagccttggtggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCgggg                                                                                                                                               >  3:355749‑M1/142‑149 (MQ=255)    gacaccggcatcaccgaccttgaagccttggtggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCggggg                                                                                                                                              <  5:283311‑M1/9‑1 (MQ=255)           tGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGc                                                                                                                                       <  6:320587/149‑1 (MQ=255)              tcaccgaccttgaagccttggtggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCGGGGGCTCGGGccc                                                                                                                                     <  8:69838‑M1/18‑1 (MQ=255)              acaGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCa                                                                                                                                    >  1:284769/1‑149 (MQ=255)                agagCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATc                                                                                                                                  <  2:176798/149‑1 (MQ=255)                   gcaagcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGAc                                                                                                                               <  2:284769/149‑1 (MQ=255)                       gcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTggg                                                                                                                           >  3:167783/1‑149 (MQ=255)                       gcaGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTggg                                                                                                                           >  8:101018/1‑149 (MQ=255)                          gAAGCTGATCGACGGTACCAAGCATCTGGTTTTGACGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCAc                                                                                                                        <  7:96320/149‑1 (MQ=255)                          gAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCAc                                                                                                                        <  6:285935/149‑1 (MQ=255)                          gAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCAc                                                                                                                        <  5:159662/149‑1 (MQ=255)                             gCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGc                                                                                                                     >  7:212189/1‑149 (MQ=255)                                 aTCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGcccc                                                                                                                  <  6:114099/148‑1 (MQ=255)                                 aTCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGcccc                                                                                                                  <  8:212189/148‑1 (MQ=255)                                   tggagtacgtgcgccagaaccatgagcgggggattgccattggccagcgcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGc                                                                                                               >  7:69838‑M1/110‑149 (MQ=255)                                     aCGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGGGTATCGGGGGTTCTTCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtg                                                                                                             >  8:26664/1‑149 (MQ=255)                                     aCGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtg                                                                                                             <  4:167783/149‑1 (MQ=255)                                                    tGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTg                                                                                              >  4:180963/1‑149 (MQ=255)                                                     ggTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTgg                                                                                             >  6:143945/1‑149 (MQ=255)                                                      gTTTTGATGTCGGTCCATCCTTCGCCGCTGTCGTCGTATCTCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTTGGCACTTCCCCCGCTGTGAGAAACCGCGGTgg                                                                                             <  6:342636/148‑1 (MQ=255)                                                      gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTggg                                                                                            >  6:202864/1‑149 (MQ=255)                                                      gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTgg                                                                                             <  7:343899/148‑1 (MQ=255)                                                           gAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTAc                                                                                        <  7:101018/148‑1 (MQ=255)                                                                 ggTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCg                                                                                 >  6:108559/1‑149 (MQ=255)                                                                     cATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCTACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCa                                                                             <  1:131309/149‑1 (MQ=255)                                                                      aTCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAg                                                                            <  7:200604/149‑1 (MQ=255)                                                                                gcTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgc                                                                  <  1:94494/149‑1 (MQ=255)                                                                                   gcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGcccc                                                                                                                  >  8:69560‑M1/62‑98 (MQ=255)                                                                                   gcagcgagccgcgcatgagcatgacgccctgagcgattgcgtaccccaccgcggtttctcaCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGcccc                                                                                                                  <  7:69560‑M1/37‑1 (MQ=255)                                                                                       gCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGCGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCGGTGAGAACCCGCGGTGGGGTACGCAATCGCTCAGGGCGTGATGCTCATgcg                                                           >  8:72351/1‑149 (MQ=255)                                                                                         gTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGcgcg                                                         >  6:254546/1‑149 (MQ=255)                                                                                              gcgGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTc                                                     <  7:150145/148‑1 (MQ=255)                                                                                               cgGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTcgc                                                   >  3:218558/1‑149 (MQ=255)                                                                                                     cATCGGGTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGGGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCAGCGagccgcgc                                              <  7:72351/148‑1 (MQ=255)                                                                                                      aTCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCAGCGagccgcgca                                             <  5:143945/148‑2 (MQ=255)                                                                                                       tCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTgg                                           <  5:202864/149‑1 (MQ=255)                                                                                                          gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCTGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTgg                                           <  2:61055/146‑1 (MQ=255)                                                                                                          gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgtg                                                                                                           <  2:170329/82‑1 (MQ=255)                                                                                                          gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgtg                                                                                                           >  1:170329/1‑82 (MQ=255)                                                                                                          gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCAGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTgg                                           >  1:61055/1‑146 (MQ=255)                                                                                                           ttGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCCAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCaa                                       <  7:26664/149‑1 (MQ=255)                                                                                                             gCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATg                                     >  1:358857/1‑149 (MQ=255)                                                                                                              cGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAACgg                                    <  2:204504/149‑1 (MQ=255)                                                                                                                                cAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGt                  >  1:129478/1‑149 (MQ=255)                                                                                                                                 aaCAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGtt                 <  3:180963/149‑1 (MQ=255)                                                                                                                                 aaCAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGtt                 >  5:125117/1‑149 (MQ=255)                                                                                                                                       ttCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGgcg           >  8:40306/1‑149 (MQ=255)                                                                                                                                       ttCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGgcg           >  8:46063/1‑149 (MQ=255)                                                                                                                                          cTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCTGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCAc        <  2:62500/149‑1 (MQ=255)                                                                                                                                          cTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCAc        <  2:129478/149‑1 (MQ=255)                                                                                                                                             gAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTa     >  8:344512/1‑149 (MQ=255)                                                                                                                                                CAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTc  >  5:254546‑M1/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GGGGGGCGCATGCACAGAGCAAGCAGAAGCTGATCGACGGTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTC  >  NC_002947/1612709‑1613000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.