New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3211031	31 (0.530)	3 (0.050)	3/250	NT	7.4%	coding (68/1254 nt)	PP_2815	hypothetical protein
	?	NC_002947	= 3211067	45 (0.800)					coding (104/1254 nt)	PP_2815	hypothetical protein

TGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCC  >  NC_002947/3210885‑3211179                                                                                                                                                    |                                                                                                                                                     tGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCg                                                                                                                                                    <  2:197933/149‑1 (MQ=255)  gCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCg                                                                                                                                                    >  7:116852/1‑148 (MQ=255)        tttCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCg                                                                                                                                              >  7:126961/1‑148 (MQ=255)                            aGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGt                                                                                                                         <  1:142104/149‑1 (MQ=255)                             ggTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTg                                                                                                                        <  8:116852/149‑1 (MQ=255)                               tACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCtcgacccactcggctggcagcgcctgagcgag                                                                                                                      >  3:354096‑M1/1‑117 (MQ=255)                                      tGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcg                                                                                                               <  7:73058‑M2/149‑4 (MQ=255)                                        cACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcc                                                                                                             <  3:127743‑M2/149‑6 (MQ=255)                                        cACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCAAGCCGAGTGGGTCGAgcgcc                                                                                                             <  5:241906‑M2/149‑6 (MQ=255)                                             ttttCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCtcgacccactcggctggcagcgcctgagcgagttcggcgcctttgc                                                                                                        <  4:354096‑M1/149‑47 (MQ=255)                                             ttttCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAAc                                                                                                        <  6:241906/149‑1 (MQ=255)                                               ttCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAAcc                                                                                                       <  8:126961/148‑1 (MQ=255)                                                tCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCtcgacccactcggctggcagcgcctgagcgagttcggcgcctttgcgc                                                                                                      <  3:235283‑M1/148‑49 (MQ=255)                                                   aGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCa                                                                                                  <  5:328085/149‑1 (MQ=255)                                                   aGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCa                                                                                                  >  1:184086/1‑149 (MQ=255)                                                    gCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCAc                                                                                                 >  8:11425/1‑149 (MQ=255)                                                    gCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCAc                                                                                                 >  3:230268/1‑149 (MQ=255)                                                      cGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTg                                                                                               <  6:331905/149‑1 (MQ=255)                                                             tGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCtt                                                                                        >  1:154838/1‑149 (MQ=255)                                                              gAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTc                                                                                       >  3:3829/1‑149 (MQ=255)                                                               aGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTc                                                                                       <  8:73058/148‑1 (MQ=255)                                                                        cACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGa                                                                              <  4:230268/148‑1 (MQ=255)                                                                        cACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGAt                                                                             <  4:127743/149‑1 (MQ=255)                                                                         aCCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATg                                                                            >  1:59953/1‑149 (MQ=255)                                                                                       gCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTggag                                                              >  1:173135/1‑149 (MQ=255)                                                                                        cACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTggag                                                              >  1:132946/1‑148 (MQ=255)                                                                                           gCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGAcc                                                          >  5:357294/1‑149 (MQ=255)                                                                                                   ccTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATc                                                  >  2:115865/1‑149 (MQ=255)                                                                                                      ggCCACGCCCCTCGGAAACCGTTCGCGAGCGTTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCt                                                >  1:33339/1‑149 (MQ=255)                                                                                                       gCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCt                                                <  2:184086/147‑1 (MQ=255)                                                                                                                       aCCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGgcgcgc                              <  7:11425/149‑1 (MQ=255)                                                                                                                       aCCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGgcgcgc                              >  5:192752/1‑149 (MQ=255)                                                                                                                               cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                      <  6:192752/149‑1 (MQ=255)                                                                                                                               cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                      <  2:173135/149‑1 (MQ=255)                                                                                                                               cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                      <  2:132946/149‑1 (MQ=255)                                                                                                                                         gcgcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctgga              <  3:235283‑M2/148‑101 (MQ=255)                                                                                                                                           gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaa           <  4:354096‑M2/149‑104 (MQ=255)                                                                                                                                           gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCa                                                                         <  7:66797/87‑1 (MQ=255)                                                                                                                                           gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTtgctg           >  7:103636/1‑149 (MQ=255)                                                                                                                                           gcAAAGGCGCCGAACTCGCTAAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCa                                                                         >  8:66797/1‑87 (MQ=255)                                                                                                                                             aaaGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCa         >  7:345629/1‑149 (MQ=255)                                                                                                                                                ggCGCtcgacccactcggcttgcagcgcctgagcgagttcggcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaatggtg      <  5:241906‑M1/149‑145 (MQ=255)                                                                                                                                                ggCGCtcgacccactcggctggcagcgcctgagcgagttcggcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaatggtg      <  3:127743‑M1/149‑145 (MQ=255)                                                                                                                                                  cgctcgacccactcggctggcagcgcctgagcgagttcggcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaatggtgca    <  7:73058‑M1/149‑147 (MQ=255)                                                                                                                                                  cgcCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTggg    >  8:309623/1‑149 (MQ=255)                                                                                                                                                   gcCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGc   <  2:33339/149‑1 (MQ=255)                                                                                                                                                    ccGAACTCGCTAAGGCGCTGCAAGCCGAGTGTGTCGAGCGCCTGAACCATGAACTGTTCTCTTCGCCCGCAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGTCGCGCCAACCGGGCAGAGTTGCTGCACTGGGcc  <  7:92598/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGCTAGGTTTCCACTGGCCCTGCGCCAAGGTACGAACTGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCC  >  NC_002947/3210885‑3211179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.