New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3211031	31 (0.530)	3 (0.050)	3/250	NT	7.4%	coding (68/1254 nt)	PP_2815	hypothetical protein
	?	NC_002947	= 3211067	45 (0.800)					coding (104/1254 nt)	PP_2815	hypothetical protein

TGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCGGTGGAG  >  NC_002947/3210922‑3211215                                                                                                                                                   |                                                                                                                                                     tGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcg                                                                                                                                                   <  7:73058‑M2/149‑4 (MQ=255)   cACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcc                                                                                                                                                 <  3:127743‑M2/149‑6 (MQ=255)   cACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCAAGCCGAGTGGGTCGAgcgcc                                                                                                                                                 <  5:241906‑M2/149‑6 (MQ=255)        ttttCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAAc                                                                                                                                            <  6:241906/149‑1 (MQ=255)          ttCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAAcc                                                                                                                                           <  8:126961/148‑1 (MQ=255)              aGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCa                                                                                                                                      >  1:184086/1‑149 (MQ=255)              aGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCa                                                                                                                                      <  5:328085/149‑1 (MQ=255)               gCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCAc                                                                                                                                     >  3:230268/1‑149 (MQ=255)               gCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCAc                                                                                                                                     >  8:11425/1‑149 (MQ=255)                 cGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTg                                                                                                                                   <  6:331905/149‑1 (MQ=255)                        tGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCtt                                                                                                                            >  1:154838/1‑149 (MQ=255)                         gAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTc                                                                                                                           >  3:3829/1‑149 (MQ=255)                          aGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTc                                                                                                                           <  8:73058/148‑1 (MQ=255)                                   cACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGa                                                                                                                  <  4:230268/148‑1 (MQ=255)                                   cACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGAt                                                                                                                 <  4:127743/149‑1 (MQ=255)                                    aCCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATg                                                                                                                >  1:59953/1‑149 (MQ=255)                                                  gCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTggag                                                                                                  >  1:173135/1‑149 (MQ=255)                                                   cACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTggag                                                                                                  >  1:132946/1‑148 (MQ=255)                                                      gCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGAcc                                                                                              >  5:357294/1‑149 (MQ=255)                                                              ccTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATc                                                                                      >  2:115865/1‑149 (MQ=255)                                                                 ggCCACGCCCCTCGGAAACCGTTCGCGAGCGTTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCt                                                                                    >  1:33339/1‑149 (MQ=255)                                                                  gCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCt                                                                                    <  2:184086/147‑1 (MQ=255)                                                                                  aCCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGgcgcgc                                                                  <  7:11425/149‑1 (MQ=255)                                                                                  aCCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGgcgcgc                                                                  >  5:192752/1‑149 (MQ=255)                                                                                          cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                                                          <  2:132946/149‑1 (MQ=255)                                                                                          cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                                                          <  2:173135/149‑1 (MQ=255)                                                                                          cgAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCggg                                                          <  6:192752/149‑1 (MQ=255)                                                                                                    gcgcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctgga                                                  <  3:235283‑M2/148‑101 (MQ=255)                                                                                                      gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaa                                               <  4:354096‑M2/149‑104 (MQ=255)                                                                                                      gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCa                                                                                                             <  7:66797/87‑1 (MQ=255)                                                                                                      gcAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTtgctg                                               >  7:103636/1‑149 (MQ=255)                                                                                                      gcAAAGGCGCCGAACTCGCTAAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCa                                                                                                             >  8:66797/1‑87 (MQ=255)                                                                                                        aaaGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCa                                             >  7:345629/1‑149 (MQ=255)                                                                                                             cgcCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTggg                                        >  8:309623/1‑149 (MQ=255)                                                                                                              gcCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGc                                       <  2:33339/149‑1 (MQ=255)                                                                                                               ccGAACTCGCTAAGGCGCTGCAAGCCGAGTGTGTCGAGCGCCTGAACCATGAACTGTTCTCTTCGCCCGCAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGTCGCGCCAACCGGGCAGAGTTGCTGCACTGGGcc                                      <  7:92598/149‑1 (MQ=255)                                                                                                                 gAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCaa                                    <  4:3829/149‑1 (MQ=255)                                                                                                                    cTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAgcgcctttgcgcataagctcgcgaacggtttccgaggggcgtggccagggcgacggcgtgctggtcatgggcggtgcaaatcactcaaaaatcggctggaaaatggtgcagttcgta                                 >  3:354096‑M2/1‑32 (MQ=255)                                                                                                                    cTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGc                                 >  6:115069/1‑149 (MQ=255)                                                                                                                       gCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGc                                 <  5:203979/146‑1 (MQ=255)                                                                                                                       gCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGc                                 >  6:203979/1‑146 (MQ=255)                                                                                                                         tCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAAcc                            >  2:209677/1‑149 (MQ=255)                                                                                                                             gcgcTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTg                          >  1:355322/1‑147 (MQ=255)                                                                                                                                 tGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTg                                          <  1:151427/127‑1 (MQ=255)                                                                                                                                 tGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTg                                          >  2:151427/1‑127 (MQ=255)                                                                                                                                    cAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCt                 >  2:116881/1‑149 (MQ=255)                                                                                                                                     aGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTg                >  1:112780/1‑149 (MQ=255)                                                                                                                                       ccGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTggg              <  8:103636/149‑1 (MQ=255)                                                                                                                                         gAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTggg              >  3:179141/1‑147 (MQ=255)                                                                                                                                         gAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGAATGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTggg              >  1:96621/1‑147 (MQ=255)                                                                                                                                          aGTGGGTCGAGCGCCTGAACCAGTCACTGGTCTCTTCGCCCGAAGATGACAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCAggggcg           >  4:223482/1‑147 (MQ=255)                                                                                                                                              ggTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCgg       >  6:60918/1‑149 (MQ=255)                                                                                                                                              ggTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCgg       <  5:115069/149‑1 (MQ=255)                                                                                                                                               gTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCGGt      >  7:336044/1‑149 (MQ=255)                                                                                                                                                   aGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCGGTGGAg  <  5:153838/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGCACCATTTTCCAGCCGATTTTTGAGTGATTTGCACCGCCCATGACCAGCACGCCGTCGCCCTGGCCACGCCCCTCGGAAACCGTTCGCGAGC‑TTATGCGCAAAGGCGCCGAACTCGCTCAGGCGCTGCCAGCCGAGTGGGTCGAGCGCCTGAACCAGTCACTGTTCTCTTCGCCCGAAGATGCCAGGTTGCTGGAGGACCCGGTCATCCTCGCGGCGTGCCGGCGCGCCAACCGGGCAGAGTTGCTGCACTGGGCCAATGCCAACCTGCAGCGCCCTGGGGAGCCGGTGGAG  >  NC_002947/3210922‑3211215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.