New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3398574	39 (0.660)	3 (0.050)	3/248	NT	6.4%	coding (232/438 nt)	aroQ‑III	type II 3‑dehydroquinate dehydratase
	?	NC_002947	= 3398596	51 (0.910)					coding (254/438 nt)	aroQ‑III	type II 3‑dehydroquinate dehydratase

TGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGCAGATCT  >  NC_002947/3398428‑3398721                                                                                                                                                   |                                                                                                                                                     tGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGt                                                                                                                                                    >  6:309289/1‑149 (MQ=255)  ggCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTg                                                                                                                                                   >  3:135590/1‑149 (MQ=255)   gCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGt                                                                                                                                                    <  7:9905/147‑1 (MQ=255)   gCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGc                                                                                                                                                  <  6:312268/149‑1 (MQ=255)                         aGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCG                                                                                                                                                      >  5:321880‑M1/1‑123 (MQ=255)                         aGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCG                                                                                                                                                      <  6:321880‑M1/123‑1 (MQ=255)                             ccTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTc                                                                                                                       >  6:128066/1‑149 (MQ=255)                                gggCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGtagctgtaatgggtccaggcaccggcattgatc                                                                                                                     <  3:353920‑M1/149‑34 (MQ=255)                                 ggCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGa                                                                                                                   >  2:125678/1‑149 (MQ=255)                                         gCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCCGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTgg                                                                                                           <  4:259659/149‑1 (MQ=255)                                               ggCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGtagctgtaatgggtccaggcaccggcattgat                                                                                                                      <  7:246518‑M1/133‑33 (MQ=255)                                               ggCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGtagctgtaatgggtccaggcaccggcattgat                                                                                                                      >  8:246518‑M1/1‑101 (MQ=255)                                                  acaGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGAt                                                                                                                  <  3:299045/133‑1 (MQ=255)                                                  acaGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGAt                                                                                                                  >  4:299045/1‑133 (MQ=255)                                                    aGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGc                                                                                                                                                  <  6:226389/100‑1 (MQ=255)                                                    aGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGc                                                                                                                                                  >  5:226389/1‑100 (MQ=255)                                                      gTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATAGAAGt                                                                                              >  4:264514/1‑149 (MQ=255)                                                         gagaGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCTATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGc                                                                                            <  1:160089/148‑1 (MQ=255)                                                         gagaGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGAt                                                                                                                  <  7:93339/126‑1 (MQ=255)                                                         gagaGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGcc                                                                                           >  2:262549/1‑149 (MQ=255)                                                         gagaGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGACGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGAt                                                                                                                  >  8:93339/1‑126 (MQ=255)                                                         gagaGCATCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGCTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGcc                                                                                           >  3:258400/1‑149 (MQ=255)                                                                       cAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGc                                                                             <  1:125678/149‑1 (MQ=255)                                                                         aCTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGT‑GTTGAAGTGcaca                                                                          >  8:4878/1‑149 (MQ=255)                                                                          cTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGcaca                                                                          >  7:146727/1‑149 (MQ=255)                                                                           ttCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCAGTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACAt                                                                         >  8:320745/1‑149 (MQ=255)                                                                                    gcCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACAt                                                                >  3:132068/1‑149 (MQ=255)                                                                                      cATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACAtt                                                               >  5:47768/1‑148 (MQ=255)                                                                                         gtgCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATg                                                           >  1:74001/1‑149 (MQ=255)                                                                                                cgcATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGa                                                    <  4:135590/149‑1 (MQ=255)                                                                                                           ggCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGcc                                         <  3:264514/149‑1 (MQ=255)                                                                                                              cTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATc                                      <  7:183549/149‑1 (MQ=255)                                                                                                              cTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCAGTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGCAGGGCCGGTGGTTGAAGGGCACCTGTCCAACATTCCTGCCAGGGCGCCATTCCGCCATc                                      >  6:80128/1‑149 (MQ=255)                                                                                                                aTGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCAc                                    >  2:244808/1‑149 (MQ=255)                                                                                                                     gACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCgg                                >  3:142309/1‑148 (MQ=255)                                                                                                                           gTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGc                         >  5:138873/1‑149 (MQ=255)                                                                                                                              gATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGcc                        >  3:123077/1‑147 (MQ=255)                                                                                                                              gATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGa                      <  6:138873/149‑1 (MQ=255)                                                                                                                                  ccGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGTCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAggtg                  >  3:209112/1‑149 (MQ=255)                                                                                                                                  ccGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAggtg                  <  8:146727/149‑1 (MQ=255)                                                                                                                                   cGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAggtgg                 >  3:164590/1‑149 (MQ=255)                                                                                                                                   cGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAggtgg                 >  3:3724/1‑149 (MQ=255)                                                                                                                                    gTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAggtggt                <  2:74001/149‑1 (MQ=255)                                                                                                                                         gATCAATGCCGGTGCCTGGACCCATTACAGCTAcggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcccccagctcctcgccc            <  3:353920‑M2/149‑117 (MQ=255)                                                                                                                                          aTCAATGCCGGTGCCTGGACCCATTACAGCTAcggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcc                           >  8:246518‑M2/1‑32 (MQ=255)                                                                                                                                          aTCAATGCCGGTGCCTGGACCCATTACAGCTAcggcattgatcagcacggcatccacccggtcctcataggcctgatggatgcgctcgcacatggcgccctcgaagttgctctggaagctctcgacctgtgcc                           <  7:246518‑M2/133‑102 (MQ=255)                                                                                                                                          aTCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCgg          >  5:170165/1‑149 (MQ=255)                                                                                                                                           tCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCggg         <  4:3724/149‑1 (MQ=255)                                                                                                                                            cAATGCGGGTGCCTGGAGCATTTAGAGCTA‑GTGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCAGATTTCCAAAATTCATGCCAGGGTGGCATTCCGCCATCAGTCGGTATTTGCCGAGGTGGTGCGCggg         <  4:258400/148‑1 (MQ=255)                                                                                                                                             aaTGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGATGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGCa       <  4:132068/149‑1 (MQ=255)                                                                                                                                             aaTGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGc        <  5:128066/148‑1 (MQ=255)                                                                                                                                              aTGCCGGTGCCTGGACCCATTACAGCTAGCGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCggg         >  1:22403/1‑147 (MQ=255)                                                                                                                                              aTGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCggg         >  5:364562/1‑146 (MQ=255)                                                                                                                                               tGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCggg         >  6:309050/1‑145 (MQ=255)                                                                                                                                                gCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGCAGa     >  6:235245/1‑148 (MQ=255)                                                                                                                                                  cGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGCAGATCt  <  7:320745/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTA‑CGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCCATCACTCGGTATTTGCCGAGGTGGTGCGCGGGCAGATCT  >  NC_002947/3398428‑3398721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.