New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4146460	41 (0.700)	3 (0.050)	3/246	NT	6.9%	coding (543/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4146507	43 (0.780)					coding (590/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

ATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCC  >  NC_002947/4146329‑4146608                                                                                                                                    |                                                                                                                                                     aTTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTg                                                                                                                                          >  6:12455/1‑144 (MQ=255) aTTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTg                                                                                                                                          <  5:12455/144‑1 (MQ=255)    cTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCTTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGc                                                                                                                                   <  8:137534/148‑1 (MQ=255)     tGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCAc                                                                                                                                 >  1:43249/1‑149 (MQ=255)         cATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTgg                                                                                                                                         <  3:70976/137‑1 (MQ=255)         cATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTgg                                                                                                                                         >  4:70976/1‑137 (MQ=255)           tGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGc                                                                                                                           >  3:271305/1‑149 (MQ=255)                gACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTc                                                                                                                      >  7:221454/1‑149 (MQ=255)                  cacGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCa                                                                                                                    <  5:47177/149‑1 (MQ=255)                       tCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTgc                                                                                                               >  3:166493/1‑149 (MQ=255)                         aCCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGa                                                                                                                                     >  2:127645/1‑125 (MQ=255)                         aCCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTAGGCCTGTCCAGCTgcgc                                                                                                             >  2:193554/1‑149 (MQ=255)                           cGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCgcataggcgcagctggacaggccaaggtgctcgaccagcatgc                                                                                                           >  2:57755‑M1/1‑106 (MQ=255)                            gAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTa                                                                                                          >  7:140319/1‑149 (MQ=255)                               accaccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                       <  7:217153/149‑1 (MQ=255)                                ccaccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCg                                                                                                      >  1:273201‑M2/1‑148 (MQ=255)                                 caccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCgg                                                                                                     <  1:212714‑M2/149‑3 (MQ=255)                                    cGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACACTCGGGAGAGACTTGACCGAGGCGACCGACACGGACCAGATCATGGCCATCAACACCCGCATGCAGGACGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtga                                                                                                  <  8:346045‑M2/149‑6 (MQ=255)                                       cAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatgg                                                                                               <  5:152‑M1/149‑56 (MQ=255)                                          cGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggcca                                                                                            <  1:57755‑M1/149‑59 (MQ=255)                                                 accaaccaGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCcgac                                                                                       >  3:276399/1‑147 (MQ=255)                                                         gcgcCTGAACTTTCTCGATACCCTCGGGCGAGGCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTTGCCTGTCCAGCTGCGCCTTTGCGGTGATGGACCCCGACGAGGACGGtt                                                                             <  7:346045/149‑1 (MQ=255)                                                         gcgcCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGtt                                                                             <  4:276399/149‑1 (MQ=255)                                                          cgcCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGttt                                                                            <  4:166493/149‑1 (MQ=255)                                                            ccTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCa                                                                          >  8:47738/1‑149 (MQ=255)                                                            ccTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCa                                                                          <  2:212714/149‑1 (MQ=255)                                                                     tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                       >  2:336882/1‑111 (MQ=255)                                                                     tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                       <  1:336882/111‑1 (MQ=255)                                                                     tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTg                                                                   <  4:271305/147‑1 (MQ=255)                                                                         gATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTgcgg                                                                <  8:140319/146‑1 (MQ=255)                                                                           tACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCCGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                         <  7:250618/135‑1 (MQ=255)                                                                           tACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCCGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                         >  8:250618/1‑135 (MQ=255)                                                                              ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                        <  2:43249/149‑1 (MQ=255)                                                                              ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                        >  7:30707/1‑149 (MQ=255)                                                                              ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGACCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                        >  1:89277/1‑149 (MQ=255)                                                                               cTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGt                                                       >  7:185482/1‑149 (MQ=255)                                                                                        gCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCgg                                              <  7:47738/149‑1 (MQ=255)                                                                                        gCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTGTGCGCATTTGCGGCGATGCAGTGACCCCCgg                                              >  6:200113/1‑149 (MQ=255)                                                                                              aCCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcac                                         >  6:181121/1‑148 (MQ=255)                                                                                               ccGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcacca                                       >  4:327296/1‑149 (MQ=255)                                                                                                cGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcaccac                                      >  4:56879/1‑149 (MQ=255)                                                                                                         cgaccCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCtggtgg                             >  7:213120/1‑149 (MQ=255)                                                                                                          gaccCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTggg                            <  1:193554/149‑1 (MQ=255)                                                                                                               ggACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACt                       <  8:185482/149‑1 (MQ=255)                                                                                                                  ccAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                         >  6:358414/1‑112 (MQ=255)                                                                                                                  ccAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                         <  5:358414/112‑1 (MQ=255)                                                                                                                   cAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCa                   >  5:307910/1‑149 (MQ=255)                                                                                                                          tGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacg            <  1:57755‑M2/149‑92 (MQ=255)                                                                                                                             ccATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacgctg         <  5:152‑M2/149‑95 (MQ=255)                                                                                                                                tCACCgcataggcgcagctggacaggccaaggtgctcgtcctgcatgcgggtgttgatggccatgatctggtccgtgtcggtcgcctcggtcaagtctctcccgagtgtatcgagaaagttcaggcgctggttggtgaccacgctggcg      <  8:346045‑M1/149‑145 (MQ=255)                                                                                                                                tCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc      <  3:56879/149‑1 (MQ=255)                                                                                                                                 caccacCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                         <  2:250651/97‑1 (MQ=255)                                                                                                                                 caccacCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                         >  1:250651/1‑97 (MQ=255)                                                                                                                                   ccgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacgctggcggtg   <  1:212714‑M1/149‑148 (MQ=255)                                                                                                                                    cgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacgctggcggtgg  >  1:273201‑M1/1‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                     ATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCC  >  NC_002947/4146329‑4146608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.