New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4146460	41 (0.700)	3 (0.050)	3/246	NT	6.9%	coding (543/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4146507	43 (0.780)					coding (590/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

ACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146359‑4146655                                                                                                                                                     |                                                                                                                                                     accaccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                                                                      <  7:217153/149‑1 (MQ=255)  ccaccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCg                                                                                                                                                     >  1:273201‑M2/1‑148 (MQ=255)   caccGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCgg                                                                                                                                                    <  1:212714‑M2/149‑3 (MQ=255)      cGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACACTCGGGAGAGACTTGACCGAGGCGACCGACACGGACCAGATCATGGCCATCAACACCCGCATGCAGGACGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtga                                                                                                                                                 <  8:346045‑M2/149‑6 (MQ=255)                   accaaccaGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCcgac                                                                                                                                      >  3:276399/1‑147 (MQ=255)                           gcgcCTGAACTTTCTCGATACCCTCGGGCGAGGCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTTGCCTGTCCAGCTGCGCCTTTGCGGTGATGGACCCCGACGAGGACGGtt                                                                                                                            <  7:346045/149‑1 (MQ=255)                           gcgcCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGtt                                                                                                                            <  4:276399/149‑1 (MQ=255)                            cgcCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGttt                                                                                                                           <  4:166493/149‑1 (MQ=255)                              ccTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCa                                                                                                                         >  8:47738/1‑149 (MQ=255)                              ccTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCa                                                                                                                         <  2:212714/149‑1 (MQ=255)                                       tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                                                                      >  2:336882/1‑111 (MQ=255)                                       tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGc                                                                                                                                                      <  1:336882/111‑1 (MQ=255)                                       tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTg                                                                                                                  <  4:271305/147‑1 (MQ=255)                                           gATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTgcgg                                                                                                               <  8:140319/146‑1 (MQ=255)                                             tACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCCGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                        <  7:250618/135‑1 (MQ=255)                                             tACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCCGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                        >  8:250618/1‑135 (MQ=255)                                                ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                                                                       <  2:43249/149‑1 (MQ=255)                                                ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                                                                       >  7:30707/1‑149 (MQ=255)                                                ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGACCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                                                                       >  1:89277/1‑149 (MQ=255)                                                 cTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGt                                                                                                      >  7:185482/1‑149 (MQ=255)                                                          gCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCgg                                                                                             <  7:47738/149‑1 (MQ=255)                                                          gCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTGTGCGCATTTGCGGCGATGCAGTGACCCCCgg                                                                                             >  6:200113/1‑149 (MQ=255)                                                                aCCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcac                                                                                        >  6:181121/1‑148 (MQ=255)                                                                 ccGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcacca                                                                                      >  4:327296/1‑149 (MQ=255)                                                                  cGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcaccac                                                                                     >  4:56879/1‑149 (MQ=255)                                                                           cgaccCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCtggtgg                                                                            >  7:213120/1‑149 (MQ=255)                                                                            gaccCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTggg                                                                           <  1:193554/149‑1 (MQ=255)                                                                                 ggACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACt                                                                      <  8:185482/149‑1 (MQ=255)                                                                                    ccAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                                                                        <  5:358414/112‑1 (MQ=255)                                                                                    ccAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                                                                        >  6:358414/1‑112 (MQ=255)                                                                                     cAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCa                                                                  >  5:307910/1‑149 (MQ=255)                                                                                            tGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacg                                                           <  1:57755‑M2/149‑92 (MQ=255)                                                                                               ccATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacgctg                                                        <  5:152‑M2/149‑95 (MQ=255)                                                                                                  tCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc                                                     <  3:56879/149‑1 (MQ=255)                                                                                                   caccacCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                                                                        >  1:250651/1‑97 (MQ=255)                                                                                                   caccacCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                                                                        <  2:250651/97‑1 (MQ=255)                                                                                                        cccGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGgccgc                                               <  8:213120/149‑1 (MQ=255)                                                                                                           gCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCggtgatggccatgatctggtccgggtcggtcgcctcggtcacggctcgcccgagggtatcgagaaagttcaggcgctggttggtgaccacgctggcggtggtttcg                                            >  2:57755‑M2/1‑43 (MQ=255)                                                                                                             aTGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGc                                          >  3:152713/1‑149 (MQ=255)                                                                                                                      gAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAgccg                                 >  7:148557/1‑149 (MQ=255)                                                                                                                        gCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAgccgcc                               <  8:30707/149‑1 (MQ=255)                                                                                                                        gCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAgccgcc                               >  3:146440/1‑149 (MQ=255)                                                                                                                                  cTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCgg                     >  8:266031/1‑149 (MQ=255)                                                                                                                                  cTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCgg                     >  4:8284/1‑149 (MQ=255)                                                                                                                                   tGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCt                                         >  2:300813/1‑128 (MQ=255)                                                                                                                                   tGTCCAGCTGCGCCTATGCGGTGATGGACCCCCACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCt                                         <  1:300813/128‑1 (MQ=255)                                                                                                                                    gTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGcc                   >  1:188000/1‑149 (MQ=255)                                                                                                                                     tCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGc                                                             >  6:319296/1‑106 (MQ=255)                                                                                                                                     tCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGc                                                             <  5:319296/106‑1 (MQ=255)                                                                                                                                       cAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTg                 <  3:327296/148‑1 (MQ=255)                                                                                                                                         gCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGcc              >  3:313306/1‑149 (MQ=255)                                                                                                                                             cgcCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTg           <  8:221454/148‑1 (MQ=255)                                                                                                                                                 tATGCGGAGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGa       >  3:87349/1‑148 (MQ=255)                                                                                                                                                     cGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAt  <  4:313306/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146359‑4146655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.