New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4417777 | 51 (0.870) | 4 (0.070) | 4/250 | NT | 7.5% | coding (99/270 nt) | PP_3906 | hypothetical protein |
? | NC_002947 | = 4417807 | 50 (0.890) | coding (129/270 nt) | PP_3906 | hypothetical protein |
CCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAA > NC_002947/4417634‑4417925 | gcGAGGCCTTCGAATACCACGCCTGACCCAGCCGAGGATGACCACATGCAGACAGCGGTGCATAAAGCTTTCGAGGACAAGGGAATGGTGCTCGGAGCGTTGCTTGATCGCAGGCAGGAAGGGCGCATCGAAGGCTTCGCCAGAATCGc < 1:39628/148‑1 (MQ=38) gAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGcac < 7:85498/149‑1 (MQ=255) gAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGca > 6:344603/1‑148 (MQ=255) gCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑gg < 3:348794/149‑1 (MQ=255) ttCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAg > 4:340053/1‑149 (MQ=255) ttCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGAGCGCAACGAAGCCTTCGCCAGAtgcttggtagc > 3:294445‑M1/1‑136 (MQ=255) cTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCaa < 5:344603/149‑1 (MQ=255) cTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCaa < 4:90084/149‑1 (MQ=255) acccacccGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGc < 3:135907/148‑1 (MQ=255) aGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAtgcttggtagcgcggggctccctgtgcgattctggcgaa < 4:294445‑M1/149‑40 (MQ=255) ccacATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGa > 4:26792/1‑149 (MQ=255) cacaTGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGAc > 2:96530/1‑149 (MQ=255) cAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTggg < 5:142238/148‑1 (MQ=255) aGACAGCCGTGCATAAAGCTTTAGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt < 7:344846/149‑1 (MQ=255) ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt < 4:249575/143‑1 (MQ=255) ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt > 3:249575/1‑143 (MQ=255) ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc < 3:340053/149‑1 (MQ=255) ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc > 5:157499/1‑149 (MQ=255) gTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCAGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc > 2:142652/1‑147 (MQ=255) tGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACACTGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCga < 1:96530/149‑1 (MQ=255) cATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCga < 3:146206/146‑1 (MQ=255) aaaGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGc > 3:314189/1‑149 (MQ=255) aaGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCGAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGc < 7:350693/148‑1 (MQ=255) ttCGAGGACAAGCGAATGGTGCTCGCAGCATTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCgg > 1:214372/1‑149 (MQ=255) ggACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCg > 5:288980/1‑149 (MQ=255) aaGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGc > 3:152717/1‑148 (MQ=255) aGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCaa < 6:157499/149‑1 (MQ=255) gtgtaTGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAATCGCGCAACGAAGCCTTCTGCAGAATCTGTCT‑GGGAGCCCCGCGCTACCAAGCATCTTGCAAGGGGAAGACCTGGGATGTGTTCGAGATCTCCACCGGCGCCATGCaa < 4:343182/144‑1 (MQ=255) gCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAg > 4:288610/1‑149 (MQ=255) aTGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAATCGCGCAACGAAGCCTTCGCCAGAtgcttggtagcgcggggctccctgtgcgattctggcgaagg > 1:245656‑M1/1‑60 (MQ=255) aTGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAtgcttggtagcgcggggctccctgtgcgattctggcgaagg < 2:245656‑M1/101‑42 (MQ=255) tGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc < 4:314189/149‑1 (MQ=255) tGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc < 4:315937/149‑1 (MQ=255) gCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTa > 6:244749/1‑146 (MQ=255) gCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAg > 6:26877/1‑149 (MQ=255) cAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGc > 2:350047/1‑149 (MQ=255) gCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGc > 4:8123/1‑140 (MQ=255) gCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGc < 3:8123/140‑1 (MQ=255) cTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGa < 5:244749/148‑1 (MQ=255) ttGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACg > 8:2691/1‑149 (MQ=255) aCGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTAc > 8:303674/1‑133 (MQ=255) gCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGgcgctg > 5:9051/1‑149 (MQ=255) aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc > 8:15401/1‑123 (MQ=255) aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc < 7:15401/123‑1 (MQ=255) aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGgcgctgcg < 3:26792/149‑1 (MQ=255) ggAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCg < 3:288610/149‑1 (MQ=255) gAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGt < 6:9051/149‑1 (MQ=255) cgcgcAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGAt < 7:2691/149‑1 (MQ=255) cgcAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGc < 1:142652/149‑1 (MQ=255) gAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTc > 3:362991/1‑147 (MQ=255) ccTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgcttcctggctgcgttcaagcaacgctgcgagcaccat < 2:245656‑M2/101‑61 (MQ=255) ccTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgattcctggctgcgttcaagcaacgctgcgagcaccat > 1:245656‑M2/1‑41 (MQ=255) cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACa < 2:318311/107‑1 (MQ=255) cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACa > 1:318311/1‑107 (MQ=255) cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCg < 6:288980/149‑1 (MQ=255) ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgcttcctggctgcgttcaagcaacgctgcgagcaccattcgcttgtcctcgaaagctttatgcacggctgtctgcatgtggtgatcct < 4:294445‑M2/149‑111 (MQ=255) ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgg > 6:86474/1‑149 (MQ=255) ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgg > 3:299984/1‑149 (MQ=255) cGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgggg > 5:131509/1‑149 (MQ=255) aaTCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGgcaa < 4:362991/149‑1 (MQ=255) aaTCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCCgcaa < 2:214372/149‑1 (MQ=255) | CCGAGGCCTTCGAATACCACGCCTGACCCACCCGAGGATCACCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAA > NC_002947/4417634‑4417925 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |