New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4417777	51 (0.870)	4 (0.070)	4/250	NT	7.5%	coding (99/270 nt)	PP_3906	hypothetical protein
	?	NC_002947	= 4417807	50 (0.890)					coding (129/270 nt)	PP_3906	hypothetical protein

CCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAAGCAAAACAGGCACTCGGCAATGAG  >  NC_002947/4417675‑4417949                                                                                                                                      |                                                                                                                                               ccacATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGa                                                                                                                                >  4:26792/1‑149 (MQ=255)  cacaTGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGAc                                                                                                                               >  2:96530/1‑149 (MQ=255)        cAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTggg                                                                                                                          <  5:142238/148‑1 (MQ=255)         aGACAGCCGTGCATAAAGCTTTAGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt                                                                                                                        <  7:344846/149‑1 (MQ=255)               ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt                                                                                                                        >  3:249575/1‑143 (MQ=255)               ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGAt                                                                                                                        <  4:249575/143‑1 (MQ=255)               ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc                                                                                                                  <  3:340053/149‑1 (MQ=255)               ccGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc                                                                                                                  >  5:157499/1‑149 (MQ=255)                 gTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCAGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTc                                                                                                                  >  2:142652/1‑147 (MQ=255)                  tGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACACTGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCga                                                                                                                <  1:96530/149‑1 (MQ=255)                    cATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCga                                                                                                                <  3:146206/146‑1 (MQ=255)                       aaaGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGc                                                                                                          >  3:314189/1‑149 (MQ=255)                        aaGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCGAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGc                                                                                                          <  7:350693/148‑1 (MQ=255)                             ttCGAGGACAAGCGAATGGTGCTCGCAGCATTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCgg                                                                                                    >  1:214372/1‑149 (MQ=255)                                  ggACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCg                                                                                               >  5:288980/1‑149 (MQ=255)                                      aaGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGc                                                                                            >  3:152717/1‑148 (MQ=255)                                       aGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCaa                                                                                          <  6:157499/149‑1 (MQ=255)                                        gtgtaTGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAATCGCGCAACGAAGCCTTCTGCAGAATCTGTCT‑GGGAGCCCCGCGCTACCAAGCATCTTGCAAGGGGAAGACCTGGGATGTGTTCGAGATCTCCACCGGCGCCATGCaa                                                                                          <  4:343182/144‑1 (MQ=255)                                        gCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAg                                                                                         >  4:288610/1‑149 (MQ=255)                                             tGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc                                                                                    <  4:315937/149‑1 (MQ=255)                                             tGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc                                                                                    <  4:314189/149‑1 (MQ=255)                                                     gCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTa                                                                               >  6:244749/1‑146 (MQ=255)                                                     gCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAg                                                                            >  6:26877/1‑149 (MQ=255)                                                      cAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGc                                                                           >  2:350047/1‑149 (MQ=255)                                                        gCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGc                                                                                  >  4:8123/1‑140 (MQ=255)                                                        gCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGc                                                                                  <  3:8123/140‑1 (MQ=255)                                                              cTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGa                                                                    <  5:244749/148‑1 (MQ=255)                                                               ttGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACg                                                                  >  8:2691/1‑149 (MQ=255)                                                                   aCGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTAc                                                                              >  8:303674/1‑133 (MQ=255)                                                                     gCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGgcgctg                                                            >  5:9051/1‑149 (MQ=255)                                                                       aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc                                                                                    >  8:15401/1‑123 (MQ=255)                                                                       aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTc                                                                                    <  7:15401/123‑1 (MQ=255)                                                                       aGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGgcgctgcg                                                          <  3:26792/149‑1 (MQ=255)                                                                            ggAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCg                                                     <  3:288610/149‑1 (MQ=255)                                                                             gAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGt                                                    <  6:9051/149‑1 (MQ=255)                                                                                 cgcgcAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGAt                                                <  7:2691/149‑1 (MQ=255)                                                                                   cgcAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGc                                              <  1:142652/149‑1 (MQ=255)                                                                                         gAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTc                                          >  3:362991/1‑147 (MQ=255)                                                                                             ccTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgcttcctggctgcgttcaagcaacgctgcgagcaccat                                                                                    <  2:245656‑M2/101‑61 (MQ=255)                                                                                             ccTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgattcctggctgcgttcaagcaacgctgcgagcaccat                                                                                    >  1:245656‑M2/1‑41 (MQ=255)                                                                                              cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACa                                                                             <  2:318311/107‑1 (MQ=255)                                                                                              cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACa                                                                             >  1:318311/1‑107 (MQ=255)                                                                                              cTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCg                                   <  6:288980/149‑1 (MQ=255)                                                                                               ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCAtctggcgaaggcttcgttgcgcgcttcctggctgcgttcaagcaacgctgcgagcaccattcgcttgtcctcgaaagctttatgcacggctgtctgcatgtggtgatcct                                  <  4:294445‑M2/149‑111 (MQ=255)                                                                                               ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgg                                  >  6:86474/1‑149 (MQ=255)                                                                                               ttCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgg                                  >  3:299984/1‑149 (MQ=255)                                                                                                 cGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCgggg                                >  5:131509/1‑149 (MQ=255)                                                                                                       aaTCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGgcaa                          <  4:362991/149‑1 (MQ=255)                                                                                                       aaTCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCCgcaa                          <  2:214372/149‑1 (MQ=255)                                                                                                        aTCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGgcaag                         <  4:299984/149‑1 (MQ=255)                                                                                                               a‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAAGCAAAACa                  <  4:152717/149‑1 (MQ=255)                                                                                                                  ggAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAAGCAAAACAgg                >  1:205681/1‑149 (MQ=255)                                                                                                                            gcTACCAAGCAtctggcgaaggcttcgttgcgctcttcctggctgcgttcaagcaacgctgcgagcaccattcgcttgtcctcgaaagctttatgcacggctgtctgcatgtggtgatcctcgggtgggtcaggcgtggtattcgaa        >  3:294445‑M2/1‑11 (MQ=255)                                                                                                                                ccAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGACTACAGCTACAAGCCGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAAGCATAACAGGCACTCGGCAATGAg  >  4:275243/1‑149 (MQ=255)                                                                                                                                      |                                                                                                                                               CCACATGCAGACAGCCGTGCATAAAGCTTTCGAGGACAAGCGAATGGTGCTCGCAGCGTTGCTTGAACGCAGCCAGGAAGCGCGCAACGAAGCCTTCGCCAGAATCGCACA‑GGGAGCCCCGCGCTACCAAGCATCTGGCAAGGGGAAGACCTGGGATGTGGTCGAGATCGCCACCGGCGCCGTGCAAGGTTTCGCCTACAGCTACAAGACGGCGCTGCGCTTCGTGGATGCCTTCGAGGCCGGGGCGGCAAGCAAAACAGGCACTCGGCAATGAG  >  NC_002947/4417675‑4417949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.