New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5347295 =	48 (0.820)	3 (0.050)	3/252	NT	6.1%	coding (717/870 nt)	PP_4703	hypothetical protein
	?	NC_002947	5347336 =	47 (0.830)					coding (758/870 nt)	PP_4703	hypothetical protein

TGAAGACTATCTGCAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCATT  >  NC_002947/5347148‑5347442                                                                                                                                                    |                                                                                                                                                    gttaaatcagttccgcaggggccaaccttttcgctcaatcaatgcccatgcgccgtttggcccggtgtgccgagccgtcgcgcattgcccagcgcaataccggcgcggtgcggcgcaggcccaggcggatcaggcgctgttgcagggGc                                                                                                                                                    >  4:243371‑M1/148‑149 (MQ=255)  gAAGACTATCTGCAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGcc                                                                                                                                                   >  4:212609/1‑149 (MQ=255)          tCTGCAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGTGTATCGACTTGCTGCCCGGCTgg                                                                                                                                            >  5:269446/1‑148 (MQ=255)          tCTGCAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTgg                                                                                                                                            <  6:269446/148‑1 (MQ=255)             gaaaCACATACGCCCGCAGATGAATTGTGATGCGCGCAGCCATGAGGTGAGACGAATCCTGCTCGACGCCCCTGACCACAGACTCCTGGCACAGCCGGTTGGCAAACTGATGCAGCCCGCGGGGAAGGACTGGCTGCCCGGCtcgccc                                                                                                                                         >  6:256891/3‑143 (MQ=255)              cAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATCCGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTggg                                                                                                                                           <  5:166915/145‑1 (MQ=255)              cAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGccc                                                                                                                                        <  2:202967/148‑1 (MQ=255)                acacATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAgg                                                                                                                                     <  8:271951/149‑1 (MQ=255)                  acaTACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCGCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATTCTGCACGCGGGTATCGACTTGCTGCCCGGCGGGGCCCAGGCa                                                                                                                                   <  5:261029/149‑1 (MQ=255)                   caTACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCAc                                                                                                                                  >  5:146818/1‑149 (MQ=255)                    aTACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACt                                                                                                                                 >  4:135079/1‑149 (MQ=255)                    aTACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTACTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACt                                                                                                                                 >  1:280616/1‑149 (MQ=255)                         cccGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGACACTGCTCg                                                                                                                            <  1:75804/149‑1 (MQ=255)                               gCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTgc                                                                                                                      <  2:280616/149‑1 (MQ=255)                                  gCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTgcag                                                                                                                    >  2:68143/1‑148 (MQ=255)                                   cATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTgcagc                                                                                                                   <  1:135561/148‑1 (MQ=255)                                    aTTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCAc                                                                                                                 >  7:152386/1‑149 (MQ=255)                                     ttctgatgaGCGCAGCCATGAGGTGATACGAATCATGCTCTCCGCCACTGCCCCCAGCAGCCTGGAACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACg                                                                                                                >  6:299289/4‑149 (MQ=255)                                       tcaatgcccatgcgccgtttggcccggtgtgccgagccgtcgcgcattgcccagcgcaataccggcgcggtgcggcgcaggcccaggcggatcaggcgctgttgcagggGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACggg                                                                                                              <  6:45843‑M1/40‑1 (MQ=255)                                       tcaatgcccatgcgccgtttggcccggtgtgccgagccgtcgcgcattgcccagcgcaataccggcgcggtgcggcgcaggcccaggcggatcaggcgctgttgcagggGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACggg                                                                                                              >  5:45843‑M1/110‑149 (MQ=255)                                       gtgATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACgg                                                                                                               <  1:149362/148‑1 (MQ=255)                                           tgcccatgcgccgtttggcccggtgtgccgagccgtcgcgcattgcccagcgcaataccggcgcggtgcggcgcaggcccaggcggatcaggcgctgttgcagggGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGcccc                                                                                                          >  6:139092‑M1/106‑149 (MQ=255)                                              gcgcAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTg                                                                                                        >  8:119719/1‑148 (MQ=255)                                                           gTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGAt                                                                                          <  8:152386/149‑1 (MQ=255)                                                            tGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATc                                                                                         <  8:81830/149‑1 (MQ=255)                                                                 cGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGCTCCGCCt                                                                                    >  2:260506/1‑149 (MQ=255)                                                                 cGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCt                                                                                    <  7:258972/149‑1 (MQ=255)                                                                  gAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTg                                                                                   >  4:330362/1‑149 (MQ=255)                                                                  gAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTg                                                                                   >  2:76457/1‑149 (MQ=255)                                                                   aaTCCTGCTCGACGCCCCTGCCCCCAGCCGGCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTgg                                                                                  <  4:242987/149‑1 (MQ=255)                                                                        tGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTg                                                                             >  4:363738/1‑149 (MQ=255)                                                                           tCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTgcgc                                                                          >  4:186452/1‑149 (MQ=255)                                                                             gACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGcgccg                                                                        >  7:283946/1‑149 (MQ=255)                                                                               cGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCa                                                                      <  7:119719/149‑1 (MQ=255)                                                                                  cccTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACcg                                                                   >  6:280655/1‑149 (MQ=255)                                                                                  cccTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACcg                                                                   >  3:26073/1‑149 (MQ=255)                                                                                  cccTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACcg                                                                   >  4:36019/1‑149 (MQ=255)                                                                                    cTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACcgcg                                                                 >  7:260101/1‑149 (MQ=255)                                                                                       cccccAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCg                                                              >  8:235208/1‑149 (MQ=255)                                                                                       cccccAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCg                                                              <  3:36019/149‑1 (MQ=255)                                                                                        ccccAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCgg                                                             >  1:266508/1‑149 (MQ=255)                                                                                        ccccAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCgg                                                             >  3:266882/1‑149 (MQ=255)                                                                                          ccAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTa                                                           >  2:24453/1‑149 (MQ=255)                                                                                                  cTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTg                                                   <  3:135079/149‑1 (MQ=255)                                                                                                   tGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTgg                                                  >  6:280919/1‑149 (MQ=255)                                                                                                     gCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTggg                                                 >  3:321804/1‑148 (MQ=255)                                                                                                     gCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTgg                                                  <  4:343513/147‑1 (MQ=255)                                                                                                      cacaGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGc                                                >  5:233553/1‑148 (MQ=255)                                                                                                                    aaaCTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTc                                 >  2:362179/1‑149 (MQ=255)                                                                                                                    aaaCTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTc                                 <  1:24453/149‑1 (MQ=255)                                                                                                                      aCTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTa                                                           <  8:66567/121‑1 (MQ=255)                                                                                                                      aCTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCgg                               <  3:186452/149‑1 (MQ=255)                                                                                                                        tGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGca                             >  3:17620/1‑149 (MQ=255)                                                                                                                                                  ctgcCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCat   <  8:260101/149‑1 (MQ=255)                                                                                                                                                  ctgcCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCat   <  6:146818/149‑1 (MQ=255)                                                                                                                                                   tgcCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCatt  >  3:243330/1‑149 (MQ=255)                                                                                                                                                    GCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCatt  <  3:268223‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGAAGACTATCTGCAACACATACGCCCGCAGCTGCATTGTGATGCGCGCAGCCATGAGGTGATACGAATCCTGCTCGACGCCCCTGCCCCCAGCCGCCTGGCACAGCCGGTTGGCAAACTGATGCTGCACGCGGGTATCGACTTGCTGCCCGGCTGGGCCCAGGCACTGCTCGGCCTGCAGCACGGGCCCCTGCAACAGCGCCTGATCCGCCTGGGCCTGCGCCGCACCGCGCCGGTATTGCGCTGGGCAATGCGCGACGGCTCGGCACACCGGGCCAAACGGCGCATGGGCATT  >  NC_002947/5347148‑5347442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.