| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5671615 = | 32 (0.540) | 4 (0.080) | 4/214 | NT | 14.5% | intergenic (+34/‑136) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | 5671700 = | 21 (0.440) | intergenic (+119/‑51) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
CCACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATC > NC_002947/5671467‑5671762 | ccACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCtt > 2:64189/1‑149 (MQ=255) ccagtcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgatg < 1:323743‑M1/2‑1 (MQ=255) aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt < 6:225554/149‑1 (MQ=255) aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt > 5:116585/1‑149 (MQ=255) gTGGATCCCGAGCGGCTGCGTCAGTGCCTGCTCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTgg < 4:281811/149‑1 (MQ=255) tcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTggg > 1:257917‑M1/144‑149 (MQ=255) gtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagaagcaggatccagaacagacggccgatatgtggcatggccggagattacgcgctccgccggtgtacggtaaaggcatgcattatcgatgtgtgcg < 4:258812‑M1/8‑5 (MQ=255) ggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcgtggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCgg > 7:202012‑M1/139‑149 (MQ=255) ggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCgg > 5:81538‑M1/139‑149 (MQ=255) cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTGTTGCGCGGTCTTGTGGGAGCgg > 8:32304/1‑149 (MQ=255) gttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacggtcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCggg > 1:353600‑M1/138‑149 (MQ=255) cGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGc > 6:305286/1‑149 (MQ=255) tccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGt > 2:29319‑M1/135‑149 (MQ=255) ccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGt > 7:293916‑M1/134‑148 (MQ=255) ccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGt > 2:62480‑M1/134‑148 (MQ=255) ccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTg < 6:136401‑M1/16‑1 (MQ=255) ggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGc > 4:176700‑M1/131‑139 (MQ=255) ggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGc < 3:176700‑M1/9‑1 (MQ=255) gcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggaggttacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCcgcg < 4:204897‑M1/22‑1 (MQ=255) gcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgatgt < 3:252851‑M1/3‑1 (MQ=255) gcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgatgt > 4:252851‑M1/128‑130 (MQ=255) gCGTCAGGGCCTTCGCCATCCGCGGCTACGGCTCCCGGTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCGGCTGCGATCCCCCCACCCCTGATGCCCCCGCAAACCGCATTGTCTGGCGCGGTCTTCTGGGAGCGGGCGTGCCcgcg < 8:324287/149‑1 (MQ=255) gTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaa < 3:177752/149‑1 (MQ=255) aGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAaga < 7:32304/148‑1 (MQ=255) gTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagaga < 4:203671/149‑1 (MQ=255) tGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagagag < 2:16944/149‑1 (MQ=255) tGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAAc < 6:116585/149‑1 (MQ=255) cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt < 5:305286/149‑1 (MQ=255) cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt < 5:75447/149‑1 (MQ=255) cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt < 5:90871/149‑1 (MQ=255) cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt < 3:270224/149‑1 (MQ=255) ggggCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTg < 3:357173/149‑1 (MQ=255) aaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCg < 1:146669‑M1/55‑1 (MQ=255) tCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCg < 1:64189/148‑1 (MQ=255) tCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGc < 4:43966/149‑1 (MQ=255) gCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCg < 6:308068/149‑1 (MQ=255) ggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTcgcg < 1:50267‑M1/67‑1 (MQ=255) gcggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTcgcg > 3:123379/1‑149 (MQ=255) tccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGc > 2:323743‑M1/80‑149 (MQ=255) cAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTTGGAGCGGGCGTGCCCGCGAAGAGGGCAACCCGATCGTTGGCACCGGCTTAGCCGGTGTTAGCGGGCACg > 3:258812/1‑149 (MQ=255) gaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc > 2:50267‑M1/76‑149 (MQ=255) tCGAGGCGCATCTGCTGCGATCCACCCAAGCATGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCACGCGATGAGAGCCCCCCCGACCTTGGCACCGGCGTCGCCGGTGTTCGCGGGCAAGCCCGcagc > 8:86103/1‑146 (MQ=37) gAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGTGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCca < 7:27551/149‑1 (MQ=255) gcATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATc > 1:248130/1‑148 (MQ=255) gcATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACACCCGCTCCcaca > 4:274585/1‑146 (MQ=255) ctgcggCGAACCACCCAAGCCTCATCTGCCCGCAAACCTCTTTGGCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGGTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATaa < 7:86103/149‑1 (MQ=25) ctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAatgc < 2:248130/149‑1 (MQ=255) ctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAatgc < 4:123379/149‑1 (MQ=255) gcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGt < 7:89822/93‑1 (MQ=255) gcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGt > 8:89822/1‑93 (MQ=255) aTCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGcc > 4:235226/1‑149 (MQ=255) aCCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACACCCGCTCCCACATCGATAATGCATGCCTTTa < 3:274585/149‑1 (MQ=255) ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTAcc > 7:247451/1‑149 (MQ=255) aCTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAatgcatgc < 1:163110/120‑1 (MQ=255) ttGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCg < 8:247451/149‑1 (MQ=255) tCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCGGCCACATCGATAATGGATGCCTTTACCGTACACCGGCCGAGCGCGTAACCTCCGGCCATGCCACata > 3:204897/1‑149 (MQ=255) gaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACatat < 5:338322‑M1/147‑1 (MQ=255) ttGTGGGAGCGGGCGTGCCCGCGAAGAGCGCAAACCCATCGTTGGCACCCGCATACCCCGTGTTAGCCGGCACGCCCGCTCCCACAACCAAAAAGCATGCCGTTACCCTACACCCCCCGAGCGCCGAATAACCGCCCAAGCCACATATc > 6:36026/1‑149 (MQ=16) | CCACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATC > NC_002947/5671467‑5671762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |