| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 198457 | 52 (0.880) | 5 (0.090) | 4/254 | NT | 9.1% | coding (3963/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 199796 | 50 (0.880) | coding (5302/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
TGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCC > NC_002947/199650‑199941 | tggtggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGca > 4:347874‑M2/1‑147 (MQ=255) gtggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGcagc > 4:308262‑M2/1‑145 (MQ=255) gtggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGcagc > 6:332207‑M2/1‑145 (MQ=255) gtggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGcagc < 4:235012‑M2/149‑5 (MQ=255) ggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGcc > 3:41700/1‑148 (MQ=34) cTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACg < 3:139758/149‑1 (MQ=35) aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTc > 1:273860/1‑149 (MQ=39) cccTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCgg > 6:377547/1‑149 (MQ=255) acTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGc < 5:281583/148‑1 (MQ=39) cGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGa < 2:180421/147‑1 (MQ=40) cGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCg > 5:151950/1‑149 (MQ=37) gCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCa < 2:273860/149‑1 (MQ=37) gcgagaTCACTTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGa < 5:377547/146‑1 (MQ=37) tCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTc < 4:243825/149‑1 (MQ=37) cTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTag > 7:136811/1‑147 (MQ=37) cTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACAACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTc < 8:136811/145‑1 (MQ=37) tACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCAAGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGt > 2:247521/1‑149 (MQ=37) aTCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCAc < 4:41700/149‑1 (MQ=37) aCCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt < 8:336106/100‑1 (MQ=37) aCCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 7:336106/1‑100 (MQ=37) aCCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACgcgc < 3:235012/148‑1 (MQ=255) caacaaAGACGGTCTGCCGATCAATAACCACTCGTAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCgg < 7:232869/149‑1 (MQ=255) caacaaAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCgg > 6:337236/1‑149 (MQ=255) caacaaAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCgg < 7:230337/149‑1 (MQ=255) acaaAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCt < 5:70245/126‑1 (MQ=38) acaaAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCt > 6:70245/1‑126 (MQ=38) acaaAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGt > 2:250036/1‑148 (MQ=255) tCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCa < 1:177475/149‑1 (MQ=255) gCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATc > 3:47648/1‑148 (MQ=255) aTCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCCAGGCCATCGAcgc > 6:259891/1‑149 (MQ=255) aTCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAAt > 4:61936/1‑138 (MQ=255) aTCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAAt < 3:61936/138‑1 (MQ=255) aTAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGt > 2:232297/1‑148 (MQ=255) ccACTCGGAGATGTACTTAAAGCTGAACGACGGCACCACTGTCGTCGAGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCCCACCAGACAACGTCTAAGTCGGCACCACCGCGCCGGTGATCAATGCCATCGACGCGGTCAgcg > 4:186933/1‑149 (MQ=14) cACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAgcgg < 4:47648/149‑1 (MQ=255) cTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGcagcttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaagggg < 1:133504‑M2/141‑102 (MQ=255) cTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGcagcttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaagggg > 2:133504‑M2/1‑40 (MQ=255) cTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGc < 1:232297/149‑1 (MQ=255) tGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCg > 7:245962/1‑149 (MQ=255) tACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGt < 1:273767/148‑1 (MQ=255) cTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCa < 3:354586/95‑1 (MQ=33) cTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCa > 4:354586/1‑95 (MQ=33) cTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGAAGCCTgc > 3:81254/1‑147 (MQ=255) ttCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCCCCAACGCGCCGGTGAt > 7:36454/1‑110 (MQ=255) ttCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGAt < 8:36454/110‑1 (MQ=255) ttCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTgg > 8:127571/1‑147 (MQ=255) aaGCTGACCGACGGCACCACCGTCGTCGTGGcagcttgaagtacagctccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtgaccgaaggggtcgcggtcagcttcgc < 8:152220‑M2/148‑118 (MQ=255) gCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGttt > 4:14299/1‑148 (MQ=255) aCCGACGTCTCCTCTGTCGTCGTGGCAGGCTACTGCAGGTCGGGCTCGGCGAGTGCAACCGCAGCAGAGATCGTCTTTGTCGGCTCCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGGAGATGCGTGGAAGTTTGa < 4:81254/146‑1 (MQ=14) ccGACGGCACCACTGTCGTCGTGGcagcttgaagtacagctccgagtggttattgatcggcagaccgtctttgttg < 6:356257‑M2/76‑53 (MQ=255) ccGACGGCACCACTGTCGTCGTGGcagcttgaagtacagctccgagtggttattgatcggcagaccgtctttgttg > 5:356257‑M2/1‑24 (MQ=255) ccGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAaac < 6:151950/149‑1 (MQ=255) cGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAaacc > 1:348035/1‑149 (MQ=255) aCGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAaacct > 5:86281/1‑148 (MQ=255) cGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAaacctga < 5:337236/149‑1 (MQ=255) ggCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGACAGCGGCGCAGATGCGTGGAAGTTTGAAaacctgaa > 7:71360/1‑149 (MQ=255) gCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAaacctgaac > 2:315384/1‑149 (MQ=255) cTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACCCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGa > 6:49150/1‑148 (MQ=255) gtcgtGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAgcggcg < 2:323181/109‑1 (MQ=255) gtcgtGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAgcggcg > 1:323181/1‑109 (MQ=255) gtGGCAGCCAACAGCACCACGGGCTCGGCGACTTCAACCGCACCAGACAACGTCTATGTCGGCAACAACGCGCCGGTGATCAATGCCATCGACGCTGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGAcccc < 3:186933/149‑1 (MQ=255) | TGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAGACAACGTCTATGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCC > NC_002947/199650‑199941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |