New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1816461 =	42 (0.710)	3 (0.050)	3/248	NT	6.8%	coding (333/750 nt)	surE	5'‑nucleotidase SurE
	?	NC_002947	1816538 =	42 (0.750)					coding (410/750 nt)	surE	5'‑nucleotidase SurE

GGGGATCAACCTCGGTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACCGGGCGCGGGCGGCGGCGC  >  NC_002947/1816392‑1816684                                                                                                                                                   |                                                                                                                                                   ggggATCAACCTCGGTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCtat                                                                                                                                                   <  3:37023/148‑1 (MQ=255) ggggATCAACCTCGGTGCCAACCTGGGCGATGACGTGCTGTAATCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCtata                                                                                                                                                  <  3:167529/149‑1 (MQ=255)  gacgttgagtacggtgcgtggcggcaacaccagacgcgactgtgcttcgaccagacgacgggcgatatAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCtata                                                                                                                                                  >  4:326580‑M1/69‑148 (MQ=255)              ggTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCcgtcgt                                                                                                                                       <  1:74415/147‑1 (MQ=255)              ggTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCgtcgtc                                                                                                                                      <  3:337637/148‑1 (MQ=255)               gTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTg                                                                                                                                    <  5:29606/149‑1 (MQ=255)                     aCCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCg                                                                                                                                >  8:169490/1‑147 (MQ=255)                     aCCTGGGAGATGACGTGCTGTATTCGGGAACGGTCGCTTCGGCTCTGGAAGGCCTCTTCCTCGGCGGTCCCTCACTGGCGTTCTCGCTGTTGTCGCTCATGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGaa                                                                                                                              <  2:236487/149‑1 (MQ=255)                       cTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGc                                                                                                                            <  3:314176/149‑1 (MQ=255)                               tGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTcgc                                                                                                                    >  4:209431/1‑149 (MQ=255)                                gACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTcgcg                                                                                                                   >  4:321579/1‑149 (MQ=255)                                         tATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGtt                                                                                                          <  7:107144/149‑1 (MQ=255)                                           ttCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCGGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTgc                                                                                                        >  8:330714/1‑149 (MQ=255)                                              gggAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTgccgc                                                                                                     >  1:80961/1‑149 (MQ=255)                                                     gTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCAc                                                                                              <  2:80961/149‑1 (MQ=255)                                                                  tGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAAcct                                                                                  >  1:254110/1‑146 (MQ=255)                                                                   tataggccgcagtcggcaggttgtccggctggcgcgacaacagcgagaacgccagcgaggtaccgccgaggaagcggcctATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTc                                                                                 >  4:326580‑M2/81‑148 (MQ=255)                                                                   ggAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTc                                                                                 >  6:252848/1‑148 (MQ=255)                                                                    gAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTcgc                                                                                                                    <  3:167932/112‑1 (MQ=255)                                                                    gAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTcgc                                                                                                                    >  4:167932/1‑112 (MQ=255)                                                                    gAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCaa                                                                               >  5:161675/1‑149 (MQ=255)                                                                      aggccgcagtcggcaggttgtccggctggcgcgacaacagcgagaacgccagcgaggtaccgccgaggaagcggcctATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAata                                                                             >  1:218944‑M2/78‑149 (MQ=255)                                                                         CCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTg                                                                                                         <  6:178566‑M1/118‑1 (MQ=255)                                                                         CCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTg                                                                                                         >  5:178566‑M1/1‑118 (MQ=255)                                                                          CGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTcc                                                                         >  2:86183‑M1/1‑149 (MQ=255)                                                                               ccTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGTCGCCACGCACCGTACTCAACGTCAATATTCCCaa                                                                      <  5:241530/147‑1 (MQ=255)                                                                                   ggcggTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGc                                                                 <  3:209431/148‑1 (MQ=255)                                                                                           cTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAg                                                         >  1:363540/1‑148 (MQ=255)                                                                                            tCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGca                                                       >  5:327527/1‑149 (MQ=255)                                                                                            tCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGca                                                       >  5:219120/1‑149 (MQ=255)                                                                                                tGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATc                                                   >  8:4224/1‑149 (MQ=255)                                                                                                    gTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTg                                               <  3:321579/149‑1 (MQ=255)                                                                                                    gTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTg                                               <  5:252848/149‑1 (MQ=255)                                                                                                        tcGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGca                                                       <  5:203176/137‑1 (MQ=255)                                                                                                        tcGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGca                                                       >  6:203176/1‑137 (MQ=255)                                                                                                         cGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATc                                          <  6:327527/149‑1 (MQ=255)                                                                                                          gCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATc                                          <  6:219120/148‑1 (MQ=255)                                                                                                          gCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATc                                          >  8:176172/1‑148 (MQ=255)                                                                                                           cTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCa                                        <  7:36610/149‑1 (MQ=255)                                                                                                            agcgagaacgccagcgaggtaccgccgaggaagcggcctATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAg                                       <  3:326580‑M2/110‑1 (MQ=255)                                                                                                             gttgtCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGc                                      >  7:279997/1‑149 (MQ=255)                                                                                                                gtCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGt                                                                                           >  2:133415/1‑93 (MQ=255)                                                                                                                gtCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGt                                                                                           <  1:133415/93‑1 (MQ=255)                                                                                                                   gcgcCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCAccc                                <  5:174879/149‑1 (MQ=255)                                                                                                                     gcCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCCCCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGAATCCCGCTCACCCGt                              >  7:51275/1‑149 (MQ=255)                                                                                                                     gcCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGt                              >  2:317160/1‑149 (MQ=255)                                                                                                                      ccAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAg                                                         <  2:7880/121‑1 (MQ=255)                                                                                                                      ccAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAg                                                         >  1:7880/1‑121 (MQ=255)                                                                                                                                 aCCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACcgg                  <  7:169490/149‑1 (MQ=255)                                                                                                                                   cTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACcgggc                >  7:14860/1‑149 (MQ=255)                                                                                                                                      ccGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACcgggcgc              <  7:4224/148‑1 (MQ=255)                                                                                                                                         aCTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACcgggcgcgggc          >  8:238831/1‑149 (MQ=255)                                                                                                                                                 ctATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACCGGGCGCGGGCGGCGgcgc  >  5:65855‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GGGGATCAACCTCGGTGCCAACCTGGGCGATGACGTGCTGTATTCGGGAACGGTCGCTGCGGCGCTGGAAGGCCGCTTCCTCGGCGGTACCTCGCTGGCGTTCTCGCTGTTGTCGCGCCAGCCGGACAACCTGCCGACTGCGGCCTATATCGCCCGTCGTCTGGTCGAAGCACAGTCGCGTCTGGTGTTGCCGCCACGCACCGTACTCAACGTCAATATTCCCAACTTGCCGCTGGAGCACATCCGTGGCATCCAGCTCACCCGTCTCGGTCACCGGGCGCGGGCGGCGGCGC  >  NC_002947/1816392‑1816684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.