New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2087031	NA (NA)	3 (0.050)	3/254	NT	NA	coding (1146/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2087061	NA (NA)					coding (1176/1302 nt)	PP_1865	transposase

CCAGCCCAGACAGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG  >  NC_002947/2087052‑2087207          |                                                                                                                                                   ccAGCCCAGACAGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCt         <  2:364704/149‑1 (MQ=31)  cAGCCCAGACAGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCtt        <  1:133769/149‑1 (MQ=32)        aGACAGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTAcggcg  <  8:215600/149‑1 (MQ=32)          |                                                                                                                                                   CCAGCCCAGACAGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG  >  NC_002947/2087052‑2087207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.