New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2535887	56 (0.950)	3 (0.050)	3/248	NT	6.5%	coding (237/345 nt)	mrpC	K(+)/H(+) antiporter subunit C
	?	NC_002947	= 2535942	33 (0.590)					coding (182/345 nt)	mrpC	K(+)/H(+) antiporter subunit C

CCATCCACGTGGTCGGTACCGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCACCTGGTAGGTACGCGGGCGCAGGATCAGCCACACCCCG  >  NC_002947/2535798‑2536079                                                                                                                                                 |                                                                                                                                          ccATCCACGTGGTCGGTACCGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAAcgcc                                                                                                                                       >  5:20553‑M2/1‑145 (MQ=255)   aTCCACGTGGTCGGTACCGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAAcgccat                                                                                                                                     >  5:281612‑M2/1‑143 (MQ=255)         gTGGTCGGTACCGGTCAGGCCGCGCGAGGCCAGCAGCACCACGAGGAACAGCGCGGTCAGGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGGCGGTGTAATGCAGCAGGGCCGGGGTAACGCCATCCTtga                                                                                                                               >  2:144443/1‑149 (MQ=255)                    cGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATcc                                                                                                                                   >  6:51503/1‑134 (MQ=255)                    cGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATcc                                                                                                                                   <  5:51503/134‑1 (MQ=255)                      gTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTcc                                                                                                                    >  4:73099/1‑147 (MQ=255)                      gTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTcc                                                                                                                    <  3:73099/147‑1 (MQ=255)                          ggCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGcc                                                                                                               >  4:350276/1‑148 (MQ=255)                                   aGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAgg                                                                                                     <  1:177369/149‑1 (MQ=255)                                        agcagcACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGTAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGcc                                                                                                >  6:154146/1‑149 (MQ=255)                                             caccacCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTtgat                                                                                                                              <  1:36414/114‑1 (MQ=255)                                             caccacCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTtgat                                                                                                                              >  2:36414/1‑114 (MQ=255)                                             caccacCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGc                                                                                           >  2:2732/1‑149 (MQ=255)                                                 accaGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCTGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGaa                                                                                       <  1:287044/149‑1 (MQ=255)                                                 accaGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGaa                                                                                       <  3:350276/149‑1 (MQ=255)                                                      gAACAGCGCGTTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGa                                                                                  <  7:13369/149‑1 (MQ=255)                                                          aGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAg                                                                              <  1:2732/149‑1 (MQ=255)                                                            cgcgGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGt                                                                            <  2:157801/149‑1 (MQ=255)                                                                   aTGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGAcccc                                                                     >  4:190120/1‑149 (MQ=255)                                                                   aTGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGAcccc                                                                     >  8:275803/1‑149 (MQ=255)                                                                      gCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGt                                                                            <  8:83952/139‑1 (MQ=255)                                                                      gCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGt                                                                            >  7:83952/1‑139 (MQ=255)                                                                             tgatgaCGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGaaa                                                             >  4:139888/1‑147 (MQ=255)                                                                             tgatgaCGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGaaa                                                             <  3:139888/147‑1 (MQ=255)                                                                               atgaCGATGGCGGTGAGCACCAGTGCCTGTGTCAGCGGGTCGGTGTAATGCAGCAGGTACTGGGTAAcgccatcgtcatcagtttcgccatgaccgcgctgttcctggtggtgctgctggcctcgcgcggcctgaccggtaccgaccac                                                         <  1:219864‑M2/149‑83 (MQ=255)                                                                                  aCGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATg                                                                                            <  4:171112/111‑1 (MQ=255)                                                                                  aCGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATg                                                                                            >  3:171112/1‑111 (MQ=255)                                                                                   cGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAAcgccatcgtcatcagtttcgccatgaccgcgctgttcctggtggtgctgctggcctcgcgcggcctgaccggtaccgaccacgtg                                                      <  6:163469‑M2/148‑86 (MQ=255)                                                                                    gATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAAcgccatcgtcatcagtttcgccatgaccgcgctgttcctggtggtgctgctggcctcgcgcggcctgaccggtaccgaccacgtgga                                                    <  7:73943‑M2/149‑88 (MQ=255)                                                                                    gATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGAcaca                                                    <  1:144443/149‑1 (MQ=255)                                                                                              aGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGa                                           <  8:50323/148‑1 (MQ=255)                                                                                               gCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGa                                                                                     >  5:63079/1‑105 (MQ=255)                                                                                               gCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGa                                                                                     <  6:63079/105‑1 (MQ=255)                                                                                                 aCCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCTGGCTGAAGATGAACAGGTTGACCCCGTACGCAAGCATACGCAGGCCCATGATCAc                                       >  8:304893/1‑149 (MQ=255)                                                                                                  ccAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCAcc                                      >  3:324335/1‑149 (MQ=255)                                                                                                      tGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCACCTggt                                  >  2:366820/1‑149 (MQ=255)                                                                                                        ccTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCACCTggta                                 <  7:275803/148‑1 (MQ=255)                                                                                                                        ggTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCAGCTGGTAGGTACGCGGGCGCAgg                 <  5:130837/148‑1 (MQ=255)                                                                                                                            tAATGCAGCATGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATg                                            <  6:198508/117‑1 (MQ=255)                                                                                                                            tAATGCAGCAGGTCCTGGGTAACGCCATCCTTCATGATTCGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATg                                            >  5:198508/1‑117 (MQ=255)                                                                                                                                       gTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCACCTGGTAGGTACGCGGGCGCAGGATCAGCCACACCCCg  >  1:15305/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                          CCATCCACGTGGTCGGTACCGGTCAGGCCGCGCGAGGCCAGCAGCACCACCAGGAACAGCGCGGTCATGGCGAAACTGATGACGATGGCGGTGAGCACCAGTGCCTGTGGCAGCGGGTCGGTGTAATGCAGCAGGTCCTGGGTAACGCCATCCTTGATGATTGGCTCCTTGCCGATGAACAGGCTGCCCATGCTGAAGATGAACAGGTTGACCCCGTACGAAAGCAGACACAGGCCCATGATCACCTGGTAGGTACGCGGGCGCAGGATCAGCCACACCCCG  >  NC_002947/2535798‑2536079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.