New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3293055 =50 (0.850)3 (0.050) 3/248 NT 5.8% coding (2339/3675 nt) PP_2893 hypothetical protein
?NC_002947 3293094 = 50 (0.900)coding (2378/3675 nt) PP_2893 hypothetical protein

AAGGGCACTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTGGCCGGGCAGCTC  >  NC_002947/3292949‑3293239
                                                                                                                                                 |                                                                                                                                                  
aaGGGCACTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAgcg                                                                                                                                                 >  2:133302/1‑149 (MQ=255)
     cACTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTgg                                                                                                                                            >  5:173695/1‑149 (MQ=255)
      aCTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTggg                                                                                                                                           <  7:206510/149‑1 (MQ=255)
      aCTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTggg                                                                                                                                           <  3:132771/149‑1 (MQ=255)
       cTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAATGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGAGCCTGGGt                                                                                                                                          <  6:116735/149‑1 (MQ=255)
       cTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGt                                                                                                                                          <  6:128207/149‑1 (MQ=255)
       cTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGt                                                                                                                                          <  3:8171/149‑1 (MQ=255)
          tCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAg                                                                                                                                       >  7:208179/1‑149 (MQ=255)
              ggTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAACGGCCGCTGGATCGATGTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATAGATACGCGCCTGGCGTTTCGCGGTGCGCGCCTGGGGGCGCTg                                                                                                                                    >  6:213092/1‑148 (MQ=255)
                tCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAAc                                                                                                                                 >  7:36090/1‑149 (MQ=255)
                   aTGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTc                                                                                                                              <  2:128907/149‑1 (MQ=255)
                    tGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTc                                                                                                                              >  5:152299/1‑148 (MQ=255)
                      ccAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAAc                                                                                                                           <  8:304038/149‑1 (MQ=255)
                         gTGGCGGCACCCTGCGCGTGCGCTACAAAGGCCTCTGGATCGATTTCCGTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGGTTCGCGGTGATCGCCTGGGTGAGCTGAACGTCAACGcc                                                                                                                        <  5:213092/149‑1 (MQ=255)
                                   ccTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATc                                                                                                              >  2:13084/1‑149 (MQ=255)
                                       cgcgtgcgcgACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCt                                                                                                         <  2:72549/149‑1 (MQ=255)
                                        gcgtgcgcgACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTg                                                                                                        <  2:84074/149‑1 (MQ=255)
                                        gcgtgcgcgACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTg                                                                                                        <  4:135871/149‑1 (MQ=255)
                                         cgtgcgcgACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTgg                                                                                                       <  7:273558/149‑1 (MQ=255)
                                             cgcgACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCaa                                                                                                   <  8:36090/149‑1 (MQ=255)
                                                   aaaGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACa                                                                                              >  1:98288/1‑148 (MQ=255)
                                                      ggCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAAcc                                                                                          <  6:152299/149‑1 (MQ=255)
                                                                tCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACTAACCGTTGTCGGGt                                                                                <  7:43581/149‑1 (MQ=255)
                                                                       cccTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTgg                                                                                                                                            <  2:202837/83‑1 (MQ=255)
                                                                       cccTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTgg                                                                                                                                            >  1:202837/1‑83 (MQ=255)
                                                                       cccTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGAtt                                                                            <  6:376236/146‑1 (MQ=255)
                                                                       cccTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGAtt                                                                            >  5:376236/1‑146 (MQ=255)
                                                                            aTCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAAc                                                                                           <  3:182828/126‑1 (MQ=255)
                                                                            aTCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAAc                                                                                           >  4:182828/1‑126 (MQ=255)
                                                                            aTCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCt                                                                     <  2:98288/148‑1 (MQ=255)
                                                                                ggCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCg                                                                >  3:83411/1‑149 (MQ=255)
                                                                                ggCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCg                                                                >  5:3372/1‑149 (MQ=255)
                                                                                       cgcCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGa                                                         <  1:13084/149‑1 (MQ=255)
                                                                                        gcCTGGACAGCACGTTGGCACCGCGGCTTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGTGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGAc                                                        <  6:300896/149‑1 (MQ=255)
                                                                                         ccTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTg                                                                                                        <  2:245052/100‑1 (MQ=255)
                                                                                         ccTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTg                                                                                                        >  1:245052/1‑100 (MQ=255)
                                                                                                 gCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTg                                               <  1:133302/149‑1 (MQ=255)
                                                                                                         gCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGgcccgcc                                        <  6:173695/148‑1 (MQ=255)
                                                                                                          caccgcgaaacgccaggcgcgtatcgatacgccgcggtgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCa                                      >  5:287716‑M2/40‑149 (MQ=255)
                                                                                                           accgcgaaacgccaggcgcgtatcgatacgccgcggtgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTg                                                                    >  3:206892‑M2/39‑118 (MQ=255)
                                                                                                           accgcgaaacgccaggcgcgtatcgatacgccgcggtgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTg                                                                    <  4:206892‑M2/80‑1 (MQ=255)
                                                                                                            CCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGACCGGGCTGGACCTGTCGGTGGCCCGCCCAtt                                    <  3:265783‑M1/149‑1 (MQ=255)
                                                                                                                 gcgTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGc                               >  8:13703/1‑149 (MQ=255)
                                                                                                                   gTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGtt                                                                                       >  5:255160/1‑91 (MQ=255)
                                                                                                                   gTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGtt                                                                                       <  6:255160/91‑1 (MQ=255)
                                                                                                                     aTCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCAt                           >  4:238348/1‑149 (MQ=255)
                                                                                                                        gATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGGGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATgg                         <  1:26093/148‑1 (MQ=255)
                                                                                                                         aTACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGACCAAACCGTTGTCGGGGGATGTCCGCCTGGCCGGGCTGGACCTGGCGGTGGCCCGCCCATTCGTGCCCAGGGTc                       >  7:168461/1‑149 (MQ=255)
                                                                                                                         aTACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTc                       >  3:149596/1‑149 (MQ=255)
                                                                                                                          tACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTc                       >  6:208744/1‑148 (MQ=255)
                                                                                                                             gcgcCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCGCGCTGGGCAAGAAAAAACCGTTGTCCGGTGATTTACCCCTGGCCGGGCTTGACCAGTCGGTTGCCCCCCCAATCGTGCCCAAGGTCCaa                    >  1:106467/1‑149 (MQ=255)
                                                                                                                             gcgcCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAAc                   >  8:95235/1‑149 (MQ=255)
                                                                                                                               gcCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGc                 <  7:13703/149‑1 (MQ=255)
                                                                                                                                 cTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCt               >  7:33641/1‑149 (MQ=255)
                                                                                                                                    gCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTg              <  4:149596/147‑1 (MQ=255)
                                                                                                                                       tttCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTGGCCgg         <  3:238348/149‑1 (MQ=255)
                                                                                                                                          cgcggtgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGACCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTGGCCGGGc       <  4:265783‑M2/141‑1 (MQ=255)
                                                                                                                                             ggtgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTGGCCGGGCAGCt   <  5:208744‑M2/145‑1 (MQ=255)
                                                                                                                                               tgAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTCGCCCGCCCATACGTGCCCATGGACGAACGCCTGGCCGGGCACCTc  >  5:183676‑M2/3‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
AAGGGCACTGTCGTGGTCGATGCCAGTGGCGGCACCCTGCGCGTGCGCGACAAAGGCCGCTGGATCGATTTCCCTTATCAGGCCCTGCGCCTGGACAGCACGTTGGCACCGCGGCGTATCGATACGCGCCTGGCGTTTCGCGGTGAGCGCCTGGGTGAGCTGAACGTCAACGCCCGGCTCGATCCGCTGGGCAAGAACAAACCGTTGTCGGGTGATTTCCGCCTGGCCGGGCTGGACCTGTCGGTGGCCCGCCCATTCGTGCCCATGGTCGAACGCCTGGCCGGGCAGCTC  >  NC_002947/3292949‑3293239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.