New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 368422557 (0.970)3 (0.050) 3/248 NT 5.6% coding (521/1284 nt) PP_3250 transporter
?NC_002947 = 3684249 47 (0.840)coding (545/1284 nt) PP_3250 transporter

AGCGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTGGCAACCCGTTTACCGGC  >  NC_002947/3684104‑3684379
                                                                                                                                                 |                                                                                                                                  
aGCGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTagc                                                                                                                                 <  2:132006‑M2/149‑4 (MQ=255)
  cGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTagcgg                                                                                                                               >  4:276070‑M2/1‑144 (MQ=255)
  cGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTagcgg                                                                                                                               >  7:169435‑M2/1‑144 (MQ=255)
  cGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTagcgg                                                                                                                               >  7:174292‑M2/1‑144 (MQ=255)
      cTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGTCCATGCCGGGTTGTTGGTGCTAGcggcgg                                                                                                                            <  1:26765/148‑1 (MQ=255)
       tCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTg                                                                                                                          >  3:235085/1‑149 (MQ=255)
       tCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTg                                                                                                                          >  7:303134/1‑149 (MQ=255)
             aTCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTctg                                                                                                                    >  3:68320/1‑149 (MQ=255)
              tCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTctgc                                                                                                                   >  7:342316/1‑149 (MQ=255)
                tGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTctgctg                                                                                                                 >  8:163993/1‑149 (MQ=255)
                  ttttCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTggg                                                                                                               >  5:333147/1‑149 (MQ=255)
                  ttttCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTggg                                                                                                               <  7:174092/149‑1 (MQ=255)
                     tCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCa                                                                                                             <  7:52580/148‑1 (MQ=255)
                       cACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTc                                                                                                                      <  8:152018/137‑1 (MQ=255)
                       cACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTc                                                                                                                      >  7:152018/1‑137 (MQ=255)
                       cACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTa                                                                                                          >  7:145356/1‑149 (MQ=255)
                        aCCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTctgc                                                                                                                   <  8:103385/139‑1 (MQ=255)
                        aCCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTctgc                                                                                                                   >  7:103385/1‑139 (MQ=255)
                                gggCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGa                                                                                                 <  1:222437/149‑1 (MQ=255)
                                   cAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGAGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGacac                                                                                              <  4:351493/149‑1 (MQ=255)
                                           tGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTg                                                                                      >  6:70469/1‑149 (MQ=255)
                                                ggTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAAc                                                                                  <  6:158384/148‑1 (MQ=255)
                                                 gTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGc                                                                                <  8:167631/149‑1 (MQ=255)
                                                  tCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGGGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCt                                                                               <  8:122502/149‑1 (MQ=255)
                                                   ctgctgGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTg                                                                              <  3:327645/149‑1 (MQ=255)
                                                    tgctgGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTgg                                                                             >  2:119560/1‑149 (MQ=255)
                                                       tgGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGc                                                                            >  4:73729/1‑147 (MQ=255)
                                                        ggCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCGACGCTGGCGAg                                                                         >  3:358188/1‑149 (MQ=255)
                                                         gCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGa                                                                          <  8:342316/147‑1 (MQ=255)
                                                                 ggCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAAc                                                                <  5:70469/149‑1 (MQ=255)
                                                                   ccAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAAc                                                                <  1:132006/147‑1 (MQ=255)
                                                                    cAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCa                                                             >  6:353842/1‑149 (MQ=255)
                                                                                gcTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCaaa                                                 <  7:163993/149‑1 (MQ=255)
                                                                                gcTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCa                                                   <  6:203920/147‑1 (MQ=255)
                                                                                gcTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCa                                                   >  5:203920/1‑147 (MQ=255)
                                                                                 cTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAAc                                                <  6:333147/149‑1 (MQ=255)
                                                                                  tCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAAcc                                                               <  3:359878/133‑1 (MQ=255)
                                                                                  tCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAAcc                                                               >  4:359878/1‑133 (MQ=255)
                                                                                  tCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAAcc                                               >  3:71813/1‑149 (MQ=255)
                                                                                    aGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAAcc                                               <  4:68320/147‑1 (MQ=255)
                                                                                    aGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCg                                              >  2:207830/1‑148 (MQ=255)
                                                                                     gTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGaa                                            <  3:73729/149‑1 (MQ=255)
                                                                                            cGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCAc                                                                      <  4:26029/116‑1 (MQ=255)
                                                                                            cGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCAc                                                                      >  3:26029/1‑116 (MQ=255)
                                                                                                  tGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTcgc                               >  6:42391/1‑149 (MQ=255)
                                                                                                      aCGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGc                            >  6:294976/1‑148 (MQ=255)
                                                                                                             tggtggCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGt                    >  6:281635/1‑149 (MQ=255)
                                                                                                             tggtggCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGt                    >  6:180348/1‑149 (MQ=255)
                                                                                                               gtggCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCGACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTgg                  <  4:358188/149‑1 (MQ=255)
                                                                                                               gtggCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGt                    <  5:353842/147‑1 (MQ=255)
                                                                                                                  gcgcCGCTCGGCCATGCCGGGTTGTTGGTGCTagcggcgccaccagcaacgtgccaagcacggggccactgagcccgcccaggctggccccggctcccagcacacctaacagccgcttgccctggccggtcgaaaacagatcgccgag                <  8:38161‑M2/148‑117 (MQ=255)
                                                                                                                    gccgcTCGGCCATGCCGGGTTGTTGGTGCTagcggcgccaccagcaacgtgccaagcacggggccactgagcccgcccaggctggccccggct                                                                     >  7:320093‑M2/1‑30 (MQ=255)
                                                                                                                    gccgcTCGGCCATGCCGGGTTGTTGGTGCTagcggcgccaccagcaacgtgccaagcacggggccactgagcccgcccaggctggccccggct                                                                     <  8:320093‑M2/93‑64 (MQ=255)
                                                                                                                    gccgcTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAggg                                    <  6:153001/126‑1 (MQ=255)
                                                                                                                        cTCGGCCATGCCGGGTTGTTGGGGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTGGCAACCCGtt         <  3:298568/149‑1 (MQ=255)
                                                                                                                           ggCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTGGCAACCCGTTTAc      >  5:262027/1‑149 (MQ=255)
                                                                                                                               aTGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTGGCAACCCGTTTACCGgc  <  8:145356/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                  
AGCGTGCTCGCCGATCTGTTTTCCACCGCCCAGGGCAAGCGGCTGTTCGGTCTGCTGGCAGCCGGGGCCAGCCTGGGCGGGCTCAGTGGCCCCGTGCTTGGCACGTTGCTGGTGGCGCCGCTCGGCCATGCCGGGTTGTTGGTGCTAGCGGCGGTGCTTCTGCTGGGCAGTATCGGCGCGACACTGTTCCTGCAACGCTGGCGAGCACGCCAACCCATTGCGATGCAAACCGAACACCAGGGCTCGCGGCCACTGGGTGGCAACCCGTTTACCGGC  >  NC_002947/3684104‑3684379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.