New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4095364	44 (0.750)	8 (0.140)	7/248	NT	15.7%	coding (120/765 nt)	PP_3603	GntR family transcriptional regulator
	?	NC_002947	= 4095423	44 (0.790)					coding (61/765 nt)	PP_3603	GntR family transcriptional regulator

CAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCC  >  NC_002947/4095277‑4095568                                                                                                                                                   |                                                                                                                                                  cAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgc                                                                                                                                                 <  3:115244‑M2/149‑3 (MQ=255)     cgcgAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcgg                                                                                                                                             <  6:64277‑M2/149‑7 (MQ=255)               ccTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCgg                                                                                                                                   <  4:81913/149‑1 (MQ=255)                cTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCggg                                                                                                                                  >  8:277762/1‑149 (MQ=255)                    cGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCt                                                                                                                              <  3:62406/149‑1 (MQ=255)                     gCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCtt                                                                                                                             <  5:250633/149‑1 (MQ=255)                     gCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCtt                                                                                                                             >  7:99698/1‑149 (MQ=255)                       accaccGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTcc                                                                                                                               <  1:249528/145‑1 (MQ=255)                       accaccGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTcc                                                                                                                               >  2:249528/1‑145 (MQ=255)                         caccGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCt                                                                                                                         >  5:118845/1‑149 (MQ=255)                             gTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTAc                                                                                                                     <  7:68615/149‑1 (MQ=255)                             gTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGGCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTAc                                                                                                                     <  5:196506/149‑1 (MQ=255)                                cGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACctg                                                                                                                  <  5:64277/149‑1 (MQ=255)                                    tGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCTTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCtgctgc                                                                                                              >  1:118014/1‑149 (MQ=255)                                        gCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTg                                                                                                          >  7:167417/1‑149 (MQ=255)                                          ccTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGt                                                                                                         >  7:159196/1‑148 (MQ=255)                                           ctctTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCa                                                                                                       <  3:173895/149‑1 (MQ=255)                                            tctTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAt                                                                                                      >  4:112794/1‑149 (MQ=255)                                             ctTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAtt                                                                                                     <  2:266617/149‑1 (MQ=255)                                                cGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGcc                                                                                                  >  2:171193/1‑149 (MQ=255)                                                   ccATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTg                                                                                               >  8:133616/1‑149 (MQ=255)                                                                   ggtcggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGaa                                                                                <  6:118845/148‑1 (MQ=255)                                                                    gtcggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGa                                                                              <  8:99698/149‑1 (MQ=255)                                                                    gtcggCAGCTGTTCGCCGCGCTTGAGCTGGCCGCTGGGAATGCGTTCGGTCTGCTGCGTGTCCAGTTCGTGGGCGAGACTGCGCGGCTTGCGCCGTGTGCTTGCCTGTACCTGCTGCTCTGTCATTGGCCTGTATTTCACCTTGGAAGa                                                                              <  6:103647/149‑1 (MQ=255)                                                                       ggCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACa                                                                            <  4:179888/148‑1 (MQ=255)                                                                        gCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAgc                                                                          >  3:314688/1‑149 (MQ=255)                                                                         cAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAgcg                                                                         <  4:115244/149‑1 (MQ=255)                                                                                  gccgcGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCTTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATa                                                                <  2:118014/149‑1 (MQ=255)                                                                                  gccgcGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgc                                                                <  7:335343‑M2/149‑84 (MQ=255)                                                                                  gccgcGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgc                                                                <  3:362411‑M2/149‑84 (MQ=255)                                                                                   ccgcGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcg                                                               <  6:151419‑M2/149‑85 (MQ=255)                                                                                    cgcgCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcatggtggtgcgtgaggcgatctcgcgg                                                              <  7:239618‑M2/149‑86 (MQ=255)                                                                                    cgcgCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAgc                                                              <  4:234581/149‑1 (MQ=255)                                                                                              cTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGtt                                                    <  8:159196/149‑1 (MQ=255)                                                                                                 gCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCtca                                                                     >  6:236308/1‑129 (MQ=255)                                                                                                 gCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCtca                                                                     <  5:236308/129‑1 (MQ=255)                                                                                                 gCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTa                                                 <  7:277762/149‑1 (MQ=255)                                                                                                        cGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcggttgcaggccgccgggcag                                            >  8:335343‑M2/1‑44 (MQ=255)                                                                                                        cGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATca                                           <  8:167417/148‑1 (MQ=255)                                                                                                         gAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCGTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATcaca                                         >  6:93218/1‑149 (MQ=255)                                                                                                         gAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATcaca                                         >  7:346055/1‑149 (MQ=255)                                                                                                            tGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTTCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATac                                      <  3:198584/149‑1 (MQ=255)                                                                                                               gTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCAtt                                                                                                     <  2:344616/83‑1 (MQ=255)                                                                                                               gTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCtcatc                                                                   >  7:147565/1‑117 (MQ=255)                                                                                                               gTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCtcatc                                                                   <  8:147565/117‑1 (MQ=255)                                                                                                                     tCAGCACCGTGACCAGTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcatggtggtgcgtgaggcgatctcgcggttgcaggccgccgggcaggtagagactcgccac                             >  8:239618‑M2/1‑31 (MQ=255)                                                                                                                         cACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGta                         <  7:133616/149‑1 (MQ=255)                                                                                                                                aCCAGGTCCTGCGCCAGACTGCGCGGCGTGCGCCGGGGCCGTGCCTGTACCTGCTGCGCTGTCATTGCCCTGTATTTCACCTTTGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGAGCACATACACCCCGTGCGGTATTTATTg                  <  6:375788/149‑1 (MQ=255)                                                                                                                                    gTTCCTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcggttgcaggccgccgggcaggtagagactcgccacggcatcggtacattc              >  5:151419‑M2/1‑16 (MQ=255)                                                                                                                                        cTGGGCCAGACTgcgcggcgacaagctgccgaccgaatcgcagatcatggccgaagagggcgtcagtcgcacggtggtgcgtgaggcgatctcgcggttgcaggccgccgggcaggtagagactcgccacggcatcggtacattcgtgc          >  4:362411‑M2/1‑12 (MQ=255)                                                                                                                                          gggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCTTTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGGGGTATTTATTGCGCGTCTTTg        >  2:309744/1‑149 (MQ=255)                                                                                                                                           ggCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGTCCATCTTTg        >  3:86568/1‑148 (MQ=255)                                                                                                                                            gCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGTCCATCTTTGCa      <  4:86568/149‑1 (MQ=255)                                                                                                                                             ccAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAg     >  5:273672/1‑149 (MQ=255)                                                                                                                                                gACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGAAGTcc  >  6:230215/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CAACCGCGAGATCGCCTCACGCACCACCGTGCGACTGACGCCCTCTTCGGCCATGATCTGCGATTCGGTCGGCAGCTTGTCGCCGCGCTTGAGCTGGCCGCTGCGAATGCGTTCGGTCAGCACCGTGACCAGTTCCTGGGCCAGACTGCGCGGCTTGCGCCGGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCC  >  NC_002947/4095277‑4095568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.