New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5630789 | 45 (0.760) | 4 (0.070) | 4/252 | NT | 7.9% | coding (319/3954 nt) | putA | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase |
? | NC_002947 | = 5630885 | 50 (0.880) | coding (415/3954 nt) | putA | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase |
GCTCGGCGATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGTGATGCGCTGATCCGCGA > NC_002947/5630739‑5631024 | gcTCGGCGATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGGAAAACTGCGCAACCAGAAAAGCGtc > 7:79467‑M2/1‑147 (MQ=255) gcTCGGCGATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtc < 8:153256‑M2/149‑3 (MQ=255) gcTCGGCGATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtc < 3:197784‑M2/149‑3 (MQ=255) gATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCCCCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGcc > 6:324821/1‑149 (MQ=255) cgccgcCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCg > 4:262451/1‑149 (MQ=255) tACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGt > 8:339197/1‑149 (MQ=255) ccgccgCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTc > 8:69632/1‑148 (MQ=255) gccgccCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAg < 7:76328/149‑1 (MQ=255) aGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCctgctg < 5:324821/149‑1 (MQ=255) cAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCa < 7:153256/149‑1 (MQ=255) gtggtgCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtcggcaccacttcctgctcggggcggcggtaggcggcggtgat < 8:125488‑M2/149‑44 (MQ=255) gtgCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATtctc > 8:148564/1‑149 (MQ=255) gtgCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATtctc > 4:328316/1‑149 (MQ=255) gtgCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGACGGTATCGTCCAGGGCCTGCTGCAGGAATtatc > 6:235391/1‑149 (MQ=255) cGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTg < 7:21577/149‑1 (MQ=255) gATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTcggcgg < 2:1947/105‑1 (MQ=255) gATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTcggcgg > 1:1947/1‑105 (MQ=255) gATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGGAGGAATTCTAGCTgt > 6:308055/1‑149 (MQ=255) aTGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtcggcaccacttcctgctcggggcggcggtaggcggcggtgatcgccgagcg < 8:323305‑M2/149‑53 (MQ=255) ctgGAGCAGGCTCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCATGGCCTGCTGCAGGAATTCTCGCTGTCGtctc < 5:235391/148‑1 (MQ=255) cgcgcCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTg < 4:333244/149‑1 (MQ=255) cTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtcggcaccacttcctgctcggggcggcggtaggcggcggtgatcgccgagcgcagtaccgactgcggcaagat > 7:323305‑M2/1‑76 (MQ=255) cTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCt < 7:69632/149‑1 (MQ=255) tGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCt > 3:279033/1‑148 (MQ=255) aGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGa < 4:120432/148‑1 (MQ=255) cgccgcTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGtcggcaccacttcctgctcggggcggcggtaggcggcggtgatcgccgagcgcagtaccgactgcggcaagatgctctcg > 7:125488‑M2/1‑69 (MQ=255) cgcTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATtctc < 3:344011/112‑1 (MQ=255) cgcTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATtctc > 4:344011/1‑112 (MQ=255) cTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGc > 5:337598/1‑149 (MQ=255) ccGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGaa < 4:279033/149‑1 (MQ=255) cGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAg > 5:224286/1‑149 (MQ=255) gCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCct < 7:148564/149‑1 (MQ=255) gCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCct < 3:328316/149‑1 (MQ=255) caccaACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCct < 4:47889/147‑1 (MQ=255) caccaACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCct > 3:47889/1‑147 (MQ=255) caccaACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCGCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgc > 6:188699/1‑149 (MQ=255) accaACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgct > 6:24469/1‑149 (MQ=255) aacaaGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGAt < 4:315011/125‑1 (MQ=255) aacaaGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGAt > 3:315011/1‑125 (MQ=255) cTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATccc < 6:272832/149‑1 (MQ=255) tGGCCGCAAGCATTGCCGAAAAACTGCGCAACAAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGAAGTGCCTGGCCGAAGCCCTGCTGAGTATaccc > 4:224870/1‑149 (MQ=255) gCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGc < 1:1927/120‑1 (MQ=255) gCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGc > 2:1927/1‑120 (MQ=255) gCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGa < 7:339197/149‑1 (MQ=255) gCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCTGGGCCTGCTGCAGGAATTCTCGc > 1:135368/1‑85 (MQ=255) gCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCTGGGCCTGCTGCAGGAATTCTCGc < 2:135368/85‑1 (MQ=255) tGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgctg > 1:152721/1‑127 (MQ=255) tGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgctg < 2:152721/127‑1 (MQ=255) ccGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGt > 3:201127/1‑149 (MQ=255) ccGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGt > 5:71562/1‑149 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgct < 3:194040/123‑1 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCctgct > 4:194040/1‑123 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTAcc < 3:10423/145‑1 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTAcc > 4:10423/1‑145 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCATCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGcc < 7:20970/112‑1 (MQ=255) cGAAAAACTGCGCAACCAGAAAAGCATCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGcc > 8:20970/1‑112 (MQ=255) aCTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGTGATgcgc < 4:201127/149‑1 (MQ=255) cgcAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGTGATGCGCTg < 7:160001/147‑1 (MQ=255) aaCCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACCAAGGTACCCGTGATGAGCTGAACcg > 8:283126/1‑149 (MQ=255) cAGAAAAGCGGCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGTGATGCGCTGATCCGCGa < 4:197784/149‑1 (MQ=255) cGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTTGTGCAGGAATTCTCGGTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGccc < 1:260319/95‑1 (MQ=255) | GCTCGGCGATCACCGCCGCCTACCGCCGCCCCGAGCAGGAAGTGGTGCCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCCTGCTGCAGGAATTCTCGCTGTCGTCTCAGGAAGGCGTGGCGCTGATGTGCCTGGCCGAAGCCCTGCTGCGTATCCCCGACAAAGGTACCCGTGATGCGCTGATCCGCGA > NC_002947/5630739‑5631024 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |