New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698727 =	61 (1.040)	5 (0.100)	4/228	NT	11.4%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	25 (0.490)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

TGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACC  >  NC_002947/5698664‑5698958                                                                                                                                                    |                                                                                                                                                     tGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGGCAGCCCGCGCCAGCCAGCGCCCCCCCACCCCGAGGGGGCGTGGGGTGACGTGGGGGGGCGGGG‑GTGGCCGGGAagag                                                                                                                                                    >  4:240289/1‑149 (MQ=255)       aGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCtt                                                                                                                                              <  6:362702/149‑1 (MQ=255)       aGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCt                                                                                                                                               <  1:227571/148‑1 (MQ=255)       aGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCt                                                                                                                                               <  4:80633/148‑1 (MQ=255)       aGCTGGCACAGAACGAAGACCTGGCGGGTAACATTGTGAACGCCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCCCCACAACCCTTGGGCCTGTGGTTATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCt                                                                                                                                               <  6:140436/148‑1 (MQ=38)             cacaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAAt                                                                                                                                          <  7:180347/147‑1 (MQ=255)              acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCCACCCCCCAACAGGAAGCGCCACCCCCACCCATGGGCCGGGTGTGGTCCGTGCGGGGGCGGGCGTTGCCC‑CGCAAAGGCCCCTgctaca                                                                                                                                        >  5:81023/1‑143 (MQ=255)               caGAACGAAGCCCTGTCGCGTTACATTCTGTACGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCCCAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAAtccct                                                                                                                                      <  3:309674/149‑1 (MQ=255)                  aaCGAAGACCTGTCGCGTTACATTCGGAAAGACCGGTTGCGACAGTTGCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAAtccctccc                                                                                                                                   <  3:240289/149‑1 (MQ=255)                     gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGAAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGaa                                                                                                                                           <  5:345548/138‑1 (MQ=255)                              tCGCTTTACATTATGTAACACCGGTTTCTAATTTTTGGCGGGCACGCCGGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGGGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTgg                                                                                                                        <  1:339130/148‑1 (MQ=255)                                                          gACAGTTTCGCGGGCAAGCCCGCTCCTGCCCGCGCCACCACAACCCTTGGGCCTGTGGTTATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCt                                                                                                                   <  3:247585/125‑1 (MQ=255)                                                           aCAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTcc                                                                                                   <  3:301211/140‑1 (MQ=255)                                                              gttcgggGGGAAAGCCGGCTCCTGCACGCCCCACCAAAACCGTTGGGCCGGTGGTTTTCCGGGCGGGGGGGGGT‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTg                                                                                       >  7:233070‑M1/8‑149 (MQ=255)                                                              gTTTCGCGGGCACGCCCGCTCCTGCACGCGCCACCCCAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTg                                                                                       <  4:231179/149‑1 (MQ=255)                                                                         AAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCg                                                                            >  7:59846‑M1/1‑149 (MQ=255)                                                                            gcccgcccccgcacggttcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcc                                                                          >  2:178370‑M2/73‑149 (MQ=255)                                                                            gcccgccaccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcc                                                                          >  7:96199‑M2/73‑149 (MQ=255)                                                                              ccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                                         >  7:349858‑M2/71‑148 (MQ=255)                                                                              ccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                                         <  8:349858‑M2/78‑1 (MQ=255)                                                                                   cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                                                  >  6:310792/1‑117 (MQ=255)                                                                                   cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                                                  <  5:310792/117‑1 (MQ=255)                                                                                    tGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCg                                                                 >  5:225839/1‑149 (MQ=255)                                                                                         gcgcCCCCACAACCTTTGGGCTTGTGGTTAGCGGTGGGGGGGGGGGC‑TGGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATc                                                            <  5:35772/149‑1 (MQ=255)                                                                                              accacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCt                                                       >  2:5329/1‑149 (MQ=255)                                                                                              accacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCt                                                       >  2:100648/1‑149 (MQ=255)                                                                                               accacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCt                                                       <  8:96199‑M2/96‑1 (MQ=255)                                                                                                   aaCCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTGCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGcac                                                   >  7:333416/1‑148 (MQ=255)                                                                                                        ttGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGcc                                             >  3:304180/1‑149 (MQ=255)                                                                                                                 tggtgATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGa                                      <  1:5329/147‑1 (MQ=255)                                                                                                                   gtgATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCt                                  <  6:225839/149‑1 (MQ=255)                                                                                                                          gTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCaa                                        >  1:369246/1‑136 (MQ=255)                                                                                                                          gTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCaa                                        <  2:369246/136‑1 (MQ=255)                                                                                                                            gggggggCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCACGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCAc                         <  5:275464/147‑1 (MQ=255)                                                                                                                              gggggCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCt                       <  7:26949/149‑1 (MQ=255)                                                                                                                                gggcgggc‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTAc                     <  6:81023/149‑1 (MQ=255)                                                                                                                                 tcgcgggcaagcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCACCCTGCACAATGCCTCAAAGACCCTCAGCCTCACCTAc                     >  6:11341‑M2/20‑149 (MQ=255)                                                                                                                                         ttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCgg             >  5:149273‑M2/12‑149 (MQ=255)                                                                                                                                         ttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCgg             >  3:17211‑M2/12‑149 (MQ=255)                                                                                                                                             ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCTCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAg         <  1:100648‑M2/142‑1 (MQ=255)                                                                                                                                             ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGCCCCTCAGCCTCACCTACGCACCCGGCgac         >  3:94921‑M2/8‑148 (MQ=255)                                                                                                                                             ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAg         >  6:59804‑M2/8‑149 (MQ=255)                                                                                                                                               gcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGt       <  5:11341‑M2/144‑1 (MQ=255)                                                                                                                                               gcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGt       >  5:176639‑M2/6‑149 (MQ=255)                                                                                                                                                  aaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTa    <  6:149273‑M2/147‑1 (MQ=255)                                                                                                                                                    gagGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTacc  <  1:178370/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGC‑TTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACC  >  NC_002947/5698664‑5698958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.