Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	3,788,210	Δ115 bp	coding (311‑425/1392 nt)	PP_3350 ←	hypothetical protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3788210	3788324	115	27 [0]	[0] 26	PP_3350	hypothetical protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3788209	0 (0.000)	25 (0.760)	23/284	0.5	100%	coding (426/1392 nt)	PP_3350	hypothetical protein
	?	NC_002947	3788325 =	0 (0.000)					coding (310/1392 nt)	PP_3350	hypothetical protein

GCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3788062‑3788209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGG  >  NC_002947/3788325‑3788469                                                                                                                                                                                                                                                                                                       GCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGCCCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCA                                                                                                                                                   >  7:41522/1‑148      CGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGT                                                                                                                                              <  4:56428/148‑1            TCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGACGGCCTGTCGCACTTCAGCCGTTGCT                                                                                                                                          >  7:24230/1‑146            TCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACAAAGGCCTGTCTCACTTAAGCCGTTGCTGC                                                                                                                                        <  6:173080/148‑1                             GCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTT                                                                                                                       <  6:10427/148‑1                                              CAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCC                                                                                                        >  6:164303/1‑146                                                    CTGGTCGCCGAAGCCCATCTCCTGGCGCCCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGG                                                                                                >  4:130237/1‑148                                                     TGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGG                                                                                               >  7:80492/1‑148                                                     TGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGG                                                                                               >  7:78189/1‑148                                                            CGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCTAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGACTCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCC                                                                                        <  6:162560/148‑1                                                                    ATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATC                                                                                >  3:179407/1‑148                                                                            GCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCG                                                                          >  6:66885/1‑146                                                                                  TACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGGTTGTCCGAAGCATCGGCCCGGTAGCGGG                                                                  >  1:191987/1‑148                                                                                       GTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCA                                                             >  3:171017/1‑148                                                                                       GTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCA                                                             <  2:191987/148‑1                                                                                              ATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGA                                                      <  6:159143/148‑1                                                                                                  CGCCCGGCGGCGAAATCGGGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGGTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTT                                                   <  4:130310/147‑1                                                                                                   GCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTT                                                   >  5:102364/1‑146                                                                                                             GAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGC                                                                             >  6:160090/1‑110                                                                                                              AAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCC                                                                            <  5:160090/110‑1                                                                                                                       TTGAAATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACA                              <  4:179407/147‑1                                                                                                                           AATCGACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGA                         >  1:39336/1‑148                                                                                                                                ACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTA                    <  6:102364/148‑1                                                                                                                                ACGAAGGCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTA                    <  5:66885/148‑1                                                                                                                                      GCCTGTCGCACTTCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTGTGTCCGAAGCATCGGCCCGGTGGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAG              <  8:51863/148‑1                                                                                                                                                  TCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGG  <  8:80492/148‑1                                                                                                                                                    AGCCTTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGG  <  8:78189/146‑1                                                                                                                                                                                                                                                                                                       GCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAGCCCATCTCCTGGCGACCTACGCGTGTGGTATAGCGCCCGGCGGCGAAATCGTGGTTGAAATCGACGAAGGCCTGTCGCACTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3788062‑3788209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGG  >  NC_002947/3788325‑3788469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.