New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4609857 | 34 (1.020) | 4 (0.130) | 4/268 | 3.3 | 11.5% | coding (344/876 nt) | PP_4081 | type IV/VI secretion system protein |
? | NC_002947 | = 4609877 | 30 (0.970) | coding (364/876 nt) | PP_4081 | type IV/VI secretion system protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGG > NC_002947/4609716‑4610004 | ccAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTa < 5:171899/148‑1 (MQ=255) aaTCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATg > 6:129370/1‑148 (MQ=255) tctcATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATACGGGAAGAAATACGCCAGCACGGCTATGAg > 6:20596/1‑148 (MQ=255) tGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCa < 1:168631/148‑1 (MQ=255) tGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCa > 8:73765/1‑148 (MQ=255) cTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTc > 6:52329/1‑147 (MQ=255) ttGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCt > 2:98200/1‑148 (MQ=255) tGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtg > 6:87389/1‑148 (MQ=255) aaTGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtgcct > 7:88594/1‑147 (MQ=255) gcACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTTCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGa < 5:129370/148‑1 (MQ=255) gcACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt < 1:98200/146‑1 (MQ=255) tCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCgg > 6:6203/1‑147 (MQ=255) gATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGa > 2:110819/1‑148 (MQ=255) cATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCTTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTgg < 5:52329/148‑1 (MQ=255) cATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTgg < 6:94338/148‑1 (MQ=255) tCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGAATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGATGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg > 2:174058/1‑147 (MQ=255) cAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGc < 1:31394/148‑1 (MQ=255) cATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGtt < 5:87389/148‑1 (MQ=255) aTCAGCAAGTGTGTAGTCAGCTCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGGGATGGAGCGGCCCGGGGGCAAAAGCAGTTg > 4:7388/1‑148 (MQ=21) aTCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTg > 5:68133/1‑148 (MQ=255) cAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa < 7:73765/148‑1 (MQ=255) tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAg > 7:145643/1‑148 (MQ=255) ttCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGcc > 8:94715/1‑148 (MQ=255) gATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTGGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCgct < 8:83606/147‑1 (MQ=255) aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCa < 4:26127/147‑1 (MQ=255) cAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGc < 5:169486/148‑1 (MQ=255) cATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATc > 1:18558/1‑148 (MQ=255) aTCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCt < 8:98794/148‑1 (MQ=255) tACGCCAGCACGGCTATGAGCCCGCGCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACCTCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGGTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGAc < 5:20596/148‑1 (MQ=255) gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTCCCTCGATGCAGCGGTGATGGAGCGGCGCTGGGGCAACATCAGTTGCTGGAGCCACGCGCCGCTGCTCGGCCTCTTCCACGGCGAGACCtg > 6:165402/1‑148 (MQ=17) gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGGGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtg > 3:52648/1‑148 (MQ=255) gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtg < 6:68133/148‑1 (MQ=255) ccAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtgg < 3:138141/148‑1 (MQ=255) aCGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtggggtgg < 8:88594/148‑1 (MQ=255) | CCAATCTCATGCTGGATGCTGCGGCACCCTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGG > NC_002947/4609716‑4610004 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |