New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4609857	34 (1.020)	4 (0.130)	4/268	3.3	11.5%	coding (344/876 nt)	PP_4081	type IV/VI secretion system protein
	?	NC_002947	= 4609877	30 (0.970)					coding (364/876 nt)	PP_4081	type IV/VI secretion system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAA  >  NC_002947/4609744‑4610008                                                                                                                                      |                                                                                                                                    cTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTc                                                                                                                        >  6:52329/1‑147 (MQ=255)  ttGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCt                                                                                                                      >  2:98200/1‑148 (MQ=255)            tGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtg                                                                                                            >  6:87389/1‑148 (MQ=255)                aaTGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGgcctgtgcct                                                                                                         >  7:88594/1‑147 (MQ=255)                           gcACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTTCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGa                                                                                             <  5:129370/148‑1 (MQ=255)                           gcACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGAt                                                                                               <  1:98200/146‑1 (MQ=255)                                 tCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCgg                                                                                        >  6:6203/1‑147 (MQ=255)                                   gATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGa                                                                                     >  2:110819/1‑148 (MQ=255)                                                 cATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCTTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTgg                                                                       <  5:52329/148‑1 (MQ=255)                                                 cATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTgg                                                                       <  6:94338/148‑1 (MQ=255)                                                   tCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGAATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGATGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTggg                                                                      >  2:174058/1‑147 (MQ=255)                                                    cAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGc                                                                    <  1:31394/148‑1 (MQ=255)                                                              cATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGtt                                                          <  5:87389/148‑1 (MQ=255)                                                               aTCAGCAAGTGTGTAGTCAGCTCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGGGATGGAGCGGCCCGGGGGCAAAAGCAGTTg                                                         >  4:7388/1‑148 (MQ=21)                                                               aTCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTg                                                         >  5:68133/1‑148 (MQ=255)                                                                    cAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGa                                                    <  7:73765/148‑1 (MQ=255)                                                                            tATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAg                                            >  7:145643/1‑148 (MQ=255)                                                                              ttCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGcc                                          >  8:94715/1‑148 (MQ=255)                                                                                  gATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTGGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCgct                                       <  8:83606/147‑1 (MQ=255)                                                                                       aCAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCa                                  <  4:26127/147‑1 (MQ=255)                                                                                        cAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGc                                <  5:169486/148‑1 (MQ=255)                                                                                           cATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATc                             >  1:18558/1‑148 (MQ=255)                                                                                            aTCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCt                            <  8:98794/148‑1 (MQ=255)                                                                                                         tACGCCAGCACGGCTATGAGCCCGCGCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACCTCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGGTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGAc               <  5:20596/148‑1 (MQ=255)                                                                                                            gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTCCCTCGATGCAGCGGTGATGGAGCGGCGCTGGGGCAACATCAGTTGCTGGAGCCACGCGCCGCTGCTCGGCCTCTTCCACGGCGAGACCtg            >  6:165402/1‑148 (MQ=17)                                                                                                            gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGGGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtg            >  3:52648/1‑148 (MQ=255)                                                                                                            gCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtg            <  6:68133/148‑1 (MQ=255)                                                                                                             ccAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtgg           <  3:138141/148‑1 (MQ=255)                                                                                                                  aCGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCtggggtgg      <  8:88594/148‑1 (MQ=255)                                                                                                                       tATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGaa  >  4:44249/1‑147 (MQ=255)                                                                                                                                      |                                                                                                                                    CTTGTTCGGGCTGGTAATGCGCCTGCGCACGCTCGATGAACTGCCCAACATCAAAGATGTGCATCAGCAAGTGCGTATTCAGATCGACAGCATCCGGGAAGAAATACGCCAGCACGGCTATGAGCCCGCTCAGTTGCTGGCGTACTCCTACGGCCTGTGCCTGTACATCGATGAAGCGGTGATGGAGCGGCCCTGGGGCAAAAGCAGTTGCTGGAGCCACGAGCCGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAA  >  NC_002947/4609744‑4610008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.