New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 196941	NA (NA)	9 (0.160)	5/248	NT	7.5%	coding (2447/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 197221	114 (1.930)					coding (2727/26049 nt)	PP_0168	putative surface adhesion protein

CGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAAcggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/196794‑196941 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGGGGTCAGTTGCTC  <  NC_002947/197221‑197072                                                                                                                                                                                                                                                                                                             ccCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GACCGTGACCCTGTCCAAC                                                                                                                                                       <  2:271358/147‑1 CGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAAC                                                                                                                                                       <  5:376145/149‑1  cCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACG                                                                                                                                                      <  7:133243/148‑1  cCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACACTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCAAACG                                                                                                                                                      >  8:181395/2‑149   CCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACGG                                                                                                                                                     >  4:91974/1‑149    CGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACGGC                                                                                                                                                    >  8:17337/1‑149    CGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACGGC                                                                                                                                                    <  2:320040/149‑1    CGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACGGC                                                                                                                                                    <  6:313673/149‑1              CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACG                                                                                                                                                      >  6:347997/1‑137              CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAACG                                                                                                                                                      <  5:347997/137‑1                      ACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GACCGTGACCCTGTCCAACG                                                                                                                                                      <  8:67604/129‑1                      ACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GACCGTGACCCTGTCCAACG                                                                                                                                                      >  7:67604/1‑129                                             GCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACGTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGTTGGACAGGGTCCCTGT‑CACCGGCGTCT                                                                                                                                                >  1:159552/1‑112                                                    TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAAC                                                                                                                                                       <  8:204509/98‑1                                                    TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAAC                                                                                                                                                       >  7:204509/1‑98                                                                                                                       CCAGACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCT                                 >  3:115875/1‑149                                                                                                                         AGACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTATGTGATCACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGC                                                                    >  2:159552/1‑112                                                                                                                         AGACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGCCTTCG                                                                                                 <  1:339708/83‑1                                                                                                                         AGACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCAAGGTGTAGGTGATCACGCCGCCTTCG                                                                                                 >  2:339708/1‑83                                                                                                                           ACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGC                             >  4:233099/1‑149                                                                                                                           ACGCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTACGTGATCACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGG                                                                  >  7:202625/1‑112                                                                                                                             GCCGGT‑GACAGTGACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCG                           >  8:115768/1‑149                                                                                                                               CGGT‑GACAGTGACCCTGT‑CACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGG                        >  5:315737/1‑149                                                                                                                                           ACCCTGTCCAACGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGG              <  7:115768/149‑1                                                                                                                                                      CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGGTTCGGGGTCAGT       <  2:277755/145‑1                                                                                                                                                      CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGGTTCGGGGTCAGT       >  1:277755/1‑145                                                                                                                                                      CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGGGGTCAGTTGCT   >  6:294857/1‑149                                                                                                                                                      CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGGGGTCAGTTGCT   >  5:112987/1‑149                                                                                                                                                      CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGGGGTCAGTTGCT   >  1:376092/1‑149                                                                                                                                                       GGCGTCTGGTCAGGCTTGCGCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGGGCCCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGGTTCGGGGTCAGTTGCTC  <  5:310214/149‑1                                                                                                                                                                                                                                                                                                             CGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GACAGTGACCCTGTCCAAcggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/196794‑196941 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGCCGCCTTCGGTGACCGACGGGCTCGCCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGGGTCGGATTCGGGGTCAGTTGCTC  <  NC_002947/197221‑197072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.