New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 196941	NA (NA)	9 (0.160)	5/248	NT	7.5%	coding (2447/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 197221	114 (1.930)					coding (2727/26049 nt)	PP_0168	putative surface adhesion protein

GACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAT  >  NC_002947/196915‑197089                           |                                                                                                                                                      gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg                            <  1:70082/149‑1 (MQ=32)  aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg                           >  4:124751/1‑149 (MQ=32)    gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGt                          >  5:19194/1‑148 (MQ=32)     ccGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa                        <  3:278032/149‑1 (MQ=34)       ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt                      <  7:6495/149‑1 (MQ=35)        gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt                     >  1:347692/1‑149 (MQ=37)        gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt                     >  8:129587/1‑149 (MQ=37)        gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt                     <  6:19194/149‑1 (MQ=37)        gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGACTACAACAACGGTTAGACCGTCACCGTCACCATCGAGAACGACACAGGCGGTAAttt                     >  4:358271/1‑149 (MQ=255)         tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc                    <  8:270388/149‑1 (MQ=35)         tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc                    <  4:289570/149‑1 (MQ=35)          gACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc                    >  1:373156/1‑148 (MQ=35)           aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  <  8:309589/149‑1 (MQ=34)           aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  <  2:339489/149‑1 (MQ=34)            ccgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg                 >  4:4244/3‑149 (MQ=11)            cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  <  4:362416/148‑1 (MQ=33)            cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg                 <  7:112630/149‑1 (MQ=33)             cgTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg                 >  1:57118/2‑148 (MQ=14)             aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg                              <  4:152385/135‑1 (MQ=32)             aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg                              >  3:152385/1‑135 (MQ=32)             aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg                 >  2:38788/1‑148 (MQ=32)               tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa              <  3:361690/149‑1 (MQ=32)               tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCa               >  4:77001/1‑148 (MQ=32)                 aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc             <  5:10625/148‑1 (MQ=32)                  cccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  <  5:124833/142‑1 (MQ=32)                  cccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  >  6:124833/1‑142 (MQ=32)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGCTCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt            >  1:51367/1‑148 (MQ=17)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  <  5:100426/141‑1 (MQ=32)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa                  >  6:100426/1‑141 (MQ=32)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGATCAACTGa          >  8:122754/1‑149 (MQ=17)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa          >  2:350661/1‑149 (MQ=32)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa          <  6:239720/149‑1 (MQ=32)                   ccTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCATCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa          >  4:191898/1‑149 (MQ=17)                    cTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc         <  4:362175/149‑1 (MQ=32)                    cTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc         <  1:38788/149‑1 (MQ=32)                       tCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc      >  2:211623/1‑149 (MQ=32)                       tCCAACGGCCAAACCATTACCGGTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc       <  5:189441/148‑1 (MQ=17)                         cAACGGCCAAAGCATTACCTTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGAGCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa                        <  2:257772/129‑1 (MQ=12)                         cAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg     >  3:8508/1‑148 (MQ=32)                           aCGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt  <  2:373156/149‑1 (MQ=32)                           aCGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt  <  7:115337/149‑1 (MQ=32)                           aCGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt  >  7:270682/1‑149 (MQ=32)                           |                                                                                                                                                      GACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGC‑CGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAT  >  NC_002947/196915‑197089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.