New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	204636 =	NA (NA)	5 (0.090)	3/244	NT	100%	coding (10142/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	207935 =	0 (0.000)					coding (13441/26049 nt)	PP_0168	putative surface adhesion protein

CTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAccaggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/204783‑204636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCA  >  NC_002947/207935‑208086                                                                                                                                                                                                                                                                                                              CTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAC                                                                                                                                                         <  7:269405/149‑1          CCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTACGC                                                                                                                                                >  6:84128/1‑149                                 gTTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTTACGTGCACGGTGAAGATCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC                                                                                                                         <  4:11443/148‑1                                 gTTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTTACGTGCACGGTGAAGATCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGT                                                                                                                          >  3:11443/2‑148                                     TTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAG                                                                                                                      <  5:84128/148‑1                                                   GACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC                                                                                                                         <  1:372510/131‑1                                                   GACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC                                                                                                                         >  2:372510/1‑131                                                                                             GGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGT                                                                                                                                                    >  8:28522/1‑62                                                                                             GGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGACCAGGT                                                                                                                                                    <  7:28522/62‑1                                                                                                                                                     CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCTCTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGC     >  4:110546/1‑149                                                                                                                                                     CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGC                                      >  6:197802/1‑116                                                                                                                                                     CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGC                                      <  5:197802/116‑1                                                                                                                                                     CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTG                                                            >  1:177200/1‑94                                                                                                                                                     CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTG                                                            <  2:177200/94‑1                                                                                                                                                      CAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCACCCAGCCGCTGGCTCACGACCTGGTCGTGACACTGAGCAACAAgccc    >  6:27349/1‑145                                                                                                                                                      CAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCC    <  7:218250/149‑1                                                                                                                                                      CAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCC    <  7:82483/149‑1                                                                                                                                                       AGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCC   <  3:71290/149‑1                                                                                                                                                        GGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAACCCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGT                       >  7:352765/1‑128                                                                                                                                                        GGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCA  <  7:146414/149‑1                                                                                                                                                        GGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGT                       <  8:352765/128‑1                                                                                                                                                                                                                                                                                                              CTGGTTTCACCGGCCTTGATGGTGACCTGGGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCTACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAccaggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/204783‑204636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCA  >  NC_002947/207935‑208086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.