New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 363543	46 (0.780)	7 (0.140)	7/222	NT	11.8%	intergenic (‑61/+106)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
	?	NC_002947	= 363602	65 (1.270)					intergenic (‑120/+47)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme

ACCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/363382‑363543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACC  <  NC_002947/363602‑363456                                                                                                                                                                                                                                                                                                                       ACCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCC                                                                                                                                                                  >  8:78558/1‑149  CCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCg                                                                                                                                                                 >  6:317884/1‑148  CCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCT                                                                                                                                                                 >  4:107619/1‑149  CCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCT                                                                                                                                                                 >  6:242661/1‑149  CCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCT                                                                                                                                                                 >  4:301677/1‑149    ACATCCAGGCCATGGGCCAGGGTGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               <  4:158553/149‑1    ACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               <  2:126486/149‑1     CATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCACGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTG                                                                                                                                                              <  4:125199/149‑1        CCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGG                                                                                                                                                             >  6:338684/1‑147         CAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAG                                                                                                                                                          >  5:243130/1‑149           GGCCATGTGCCAGGGAGCGGGCTACCCAGCCGCTGCCGATCACGCCGCTACCAATGCCGTCGAAGGTTTTGATTTCAGTGATAAAGCGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCG                                                                                                                                                        <  7:153925/149‑1           GGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCG                                                                                                                                                        >  8:281419/1‑149            GCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGG                                                                                                                                                       <  5:133259/149‑1                                                GATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGG                                                                                                                                                      >  6:69045/1‑114                                                GATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGG                                                                                                                                                      <  5:69045/114‑1                                                         GCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGC                                                                                                          >  5:236711/1‑149                                                                      GCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGG                                                                                             <  5:338684/149‑1                                                                                TGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGC                                                                                    <  6:236711/148‑1                                                                                 GATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               >  4:30220/1‑72                                                                                 GATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               <  3:30220/72‑1                                                                                           ATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTT                                                                        >  6:322629/1‑149                                                                                             AAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAG                                                                      <  5:322629/149‑1                                                                                               AGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               >  4:193797/1‑58                                                                                               AGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGT                                                                                                                                                               <  3:193797/58‑1                                                                                                                               TAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCC                                                                                <  3:209201/105‑1                                                                                                                               TAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCC                                                                                >  4:209201/1‑105                                                                                                                                                        TGGGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAA           <  4:132473/149‑1                                                                                                                                                          GGAGCGGGCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAA          >  5:81341/1‑148                                                                                                                                                                 GCGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACC  >  7:78558/1‑149                                                                                                                                                                                                                                                                                                                       ACCACATCCAGGCCATGGGCCAGGGCGCGGGCGACCCAGCCGCTGCCGATCACGCCGCTACCCAGGGCGGCGAAGGTTTTGATTTCAGTGATAAAGGGCATAGCTGGTCCTCAGGGTAAAACACAGTAATCAGGGTTCATGGCTAACCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/363382‑363543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcGTGCCCGTGAAGCAGGCAACGCGATGGATGGCACCGGCCGTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGTTAGCCATGAACCCTGATTACTGTGTTTTACCCTGAGGACCAGCTATGCCCTTTATCACTGAAATCAAAACC  <  NC_002947/363602‑363456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.