New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	688995 =	48 (0.810)	3 (0.050)	3/246	NT	5.3%	coding (41/714 nt)	PP_0590	ArsR family transcriptional regulator
	?	NC_002947	689058 =	62 (1.090)					coding (104/714 nt)	PP_0590	ArsR family transcriptional regulator

GACGATGAAGTCAGGCCAGTCATTATCGCGAGCTCATTGGCCAACCGTGGTGTGCCATCGATCAATGCCCACAACATGGCACTGCGCTTGGGGTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/689094‑688995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGGCATGAAGCCAGGGGCCGCAAACGTTACTTCTGCCTGGCTACCCCGCAGGTCGGAGCAGCGGTAGA  >  NC_002947/689058‑689205                                                                                                                                                                                                                                                          GACGATGAAGTCAGGCCAGTCATTATCGCGAGCTCATTGGCCAACCGTGGTGTGCCATCGATCAATGCCCACAACATGGCACTGCGCTTGGGGTCGGCCAATGAGCTCGCGATAATGACAGGCCTGACTTCATCGTCAGCCTGCGCACA                                                                                                     >  3:272934/1‑149                                    ATTGGCCAACCGTGGTGTGCCATCGATCAATGCCCACAACATGGCACTGCGCTTGGGGTCGGCCAATGAGCTCGGGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGG                                                                   >  4:255508/1‑148                                    ATTGGCCAACCGTGGTGTGCCATCGATCAATGCCCACAACATGGCACTGCGCTTGGGGTCGGCCAATGAGCTCGCGATAATGACAGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAG                                                                    <  4:272934/147‑1                                                                                                   CAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGGCATGAAGCCAGGGGCCGCAAACGTTACTTCTGCCTGGCTACCCCGCAGGTCGGAGCAGCGG      >  8:277402/1‑146                                                                                                   CAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCT                                                                       >  2:121881/1‑81                                                                                                    AATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGGCATGAAGCCAGGGGCCGCAAACGTTACTTCTGCCTGGCTACCCCGCAGGTCGGAGCAGCGGTAGA  <  4:353033/149‑1                                                                                                                                                                                                                                                          GACGATGAAGTCAGGCCAGTCATTATCGCGAGCTCATTGGCCAACCGTGGTGTGCCATCGATCAATGCCCACAACATGGCACTGCGCTTGGGGTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/689094‑688995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGGCATGAAGCCAGGGGCCGCAAACGTTACTTCTGCCTGGCTACCCCGCAGGTCGGAGCAGCGGTAGA  >  NC_002947/689058‑689205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.