New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	688995 =	48 (0.810)	3 (0.050)	3/246	NT	5.3%	coding (41/714 nt)	PP_0590	ArsR family transcriptional regulator
	?	NC_002947	689058 =	62 (1.090)					coding (104/714 nt)	PP_0590	ArsR family transcriptional regulator

TTTTCTGCGGCTTATACTGGCGAGCCAGGCCAGTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGG  >  NC_002947/688847‑689140                                                                                                                                                     |                                                                                                                                                  tctaccgctgctccgacctgcggggtagccaggcagaagtaacgtttgcggcccctggcttcatgcctgagcaaaccggccgacgacagcagcgaaaggtgtgcgcaggctgacgatgaagtcaggccagtcattatcgcgagctcatt                                                                                                                                                   <  4:353033‑M1/1‑1 (MQ=255)    tCTGCGGCTTATACTGGCGAGCCAGGCCAGTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATgg                                                                                                                                                 <  7:134006/148‑1 (MQ=255)     ccgctgctccgacctgcggggtagccaggcagaagtaacgtttgcggcccctggcttcatgcctgagcaaaccggccgacgacagcagcgaaaggtgtgcgcaggctgacgatgaagtcaggccagtcattatcgcgagctcatTg                                                                                                                                                  >  8:277402‑M1/145‑146 (MQ=255)                 cTGGCGAGCCAGGCCAGTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAgcg                                                                                                                                    <  4:24203/148‑1 (MQ=255)                  tGGCGAGCCAGGCCAGTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAgcg                                                                                                                                    >  5:43043/1‑147 (MQ=255)                          caggccagTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCTCCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGACAAATTGCCAGCATGATGGCAGACCCCCAGAGCAGTGCCaag                                                                                                                          >  7:133076/1‑147 (MQ=255)                          caggccagTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTTTCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCAtg                                                                                                                          <  3:61030/149‑1 (MQ=255)                                agTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTgg                                                                                                                    <  4:331420/149‑1 (MQ=255)                                            agGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGAt                                                                                                        <  8:305008/149‑1 (MQ=255)                                                         gCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGCCCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCacacaccctt                                                                                           >  8:285908/1‑143 (MQ=255)                                                                 ggCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCaa                                                                                    <  3:77179/148‑1 (MQ=255)                                                                  cctgagcaaaccggccgacgacagcagcgaaaggtgtgcgcaggctgacgatgaagtcaggccagtcattatcccgagctcatTGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAAt                                                                                   >  4:255508‑M1/84‑148 (MQ=255)                                                                   ctgagcaaaccggccgacgacagcagcgaaaggtgtgcgcaggctgacgatgaagtcaggcctgtcattatcgcgagctcatTGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAAt                                                                                   <  4:272934‑M1/65‑1 (MQ=255)                                                                      agcaaaccggccgacgacagcagcgaaaggtgtgcgcaggctgacgatgaagtcaggccagtcattatcgcgagctcatTg                                                                                                                                                  >  2:121881‑M1/80‑81 (MQ=255)                                                                       cGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTc                                                                             >  6:345022/1‑149 (MQ=255)                                                                           tCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGa                                                                         <  6:297095/149‑1 (MQ=255)                                                                              ccACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATaa                                                                      >  6:239077/1‑149 (MQ=255)                                                                              ccACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATaa                                                                      >  8:313644/1‑149 (MQ=255)                                                                                  cGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCAcacca                                                                                               >  6:129433/1‑120 (MQ=255)                                                                                  cGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCAcacca                                                                                               <  5:129433/120‑1 (MQ=255)                                                                                  cGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTACCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGATCGAGATAATGAc                                                                  >  4:12199/1‑149 (MQ=255)                                                                                      aaCTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGc                                                              <  5:79485/149‑1 (MQ=255)                                                                                        cTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCt                                                            <  6:43043/149‑1 (MQ=255)                                                                                         ttGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGTCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCt                                                            >  4:161118/1‑148 (MQ=255)                                                                                         ttGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTgg                                                                                                                    <  1:173214/92‑1 (MQ=255)                                                                                         ttGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCATGATGGCCGACCCCAAGCGCAGTGCAATGTTGTgg                                                                                                                    >  2:173214/1‑92 (MQ=255)                                                                                            cAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGAc                                                         <  2:187836/148‑1 (MQ=255)                                                                                             aGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACt                                                        >  3:153634/1‑148 (MQ=255)                                                                                              gggAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGcaca                                                                                                  >  5:22818/1‑105 (MQ=255)                                                                                              gggAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGcaca                                                                                                  <  6:22818/105‑1 (MQ=255)                                                                                                    tgtgcgcaggctgacgatgaagtcaggcctgtcattatcgcgagctcatTGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTc                                                >  3:272934‑M1/50‑149 (MQ=255)                                                                                                     ataAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGt                                                 >  4:97509/1‑147 (MQ=255)                                                                                                         ggACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCt                                           <  5:239077/149‑1 (MQ=255)                                                                                                          gACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGc                                             <  4:356643/146‑1 (MQ=255)                                                                                                          gACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGc                                             >  3:356643/1‑146 (MQ=255)                                                                                                               gAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAAt                                                                                   >  1:97209/1‑103 (MQ=255)                                                                                                               gAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAAt                                                                                   <  2:97209/103‑1 (MQ=255)                                                                                                               gAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGcac                                     >  4:107429/1‑149 (MQ=255)                                                                                                                     agccagcAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCttt                               <  3:97509/149‑1 (MQ=255)                                                                                                                      gccagcAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTc                              <  7:285908/149‑1 (MQ=255)                                                                                                                       cgagctgTATCAGCCAAATTGCCAGGCTGATGGCGGACCGCAAGCGGAGTGCGATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGAGTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCg                             <  4:70750/147‑1 (MQ=255)                                                                                                                           cagTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCgctgc                         >  6:228735/1‑149 (MQ=255)                                                                                                                                  aGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTgtcgtc                  >  2:209351/1‑149 (MQ=255)                                                                                                                                  aGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTATGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGATTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTgtcgtc                  >  6:331878/1‑149 (MQ=255)                                                                                                                                   gCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGtcgtcg                 >  1:1113/1‑149 (MQ=255)                                                                                                                                      aaaTTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGcc              >  2:49315/1‑149 (MQ=255)                                                                                                                                       aaTTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCg             <  5:228735/149‑1 (MQ=255)                                                                                                                                       aaTTGACAGCTTGATGGCCGACCCCAAGCTCAGTGCCATTTTGTTTGCATTGATCGATCGCACACAAAGGTTGGCCAATTAGGTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCATCGGCCg             <  8:133076/149‑1 (MQ=255)                                                                                                                                           gCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGtt          <  7:313644/148‑1 (MQ=255)                                                                                                                                            ccAGCCTGATGGCCGACCGCTAGCGCAGTTCCATGTTGTGGGCATTGTTGGATGGCAGACGACGGTTGGCGAATGAGCTCGCGATAATGAGTGGCCTGACTTCATCGTCAGCCTGCGca                                      <  8:304152/119‑1 (MQ=255)                                                                                                                                            ccAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCgg            >  3:105243/1‑145 (MQ=255)                                                                                                                                            ccAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCgg            <  4:105243/145‑1 (MQ=255)                                                                                                                                            ccAGCCTGATGGCCGACCCCAAGCGCAGAGCCATGTAGTGGGCATTGATCGATGGCACACCACGGTAGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGca                                      >  7:304152/1‑119 (MQ=255)                                                                                                                                             cAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGc       <  7:25608/149‑1 (MQ=255)                                                                                                                                               gCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTc                              <  4:251102/124‑1 (MQ=255)                                                                                                                                                ccTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAACCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCa    <  5:345022/149‑1 (MQ=255)                                                                                                                                                   gATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAgg  >  5:382312/1‑148 (MQ=255)                                                                                                                                                   gATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAgg  >  7:120602/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TTTTCTGCGGCTTATACTGGCGAGCCAGGCCAGTGCCAGCGAGAGGCGCTTCCCTGGCAGGGTTGGCCATCGCATCCCCACCGTGAACTTGCAGGGAGTTATAAGGACATGAACGCAGCCAGCAGTATCAGCCAAATTGCCAGCCTGATGGCCGACCCCAAGCGCAGTGCCATGTTGTGGGCATTGATCGATGGCACACCACGGTTGGCCAATGAGCTCGCGATAATGACTGGCCTGACTTCATCGTCAGCCTGCGCACACCTTTCGCTGCTGTCGTCGGCCGGTTTGCTCAGG  >  NC_002947/688847‑689140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.