| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 744921 = | NA (NA) | 21 (0.360) | 17/256 | NT | 33.9% | intergenic (‑586/+45) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | 2217629 = | 41 (0.690) | coding (546/828 nt) | PP_1958 | hypothetical protein | |||||
TACGTGGCTGCGCCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/745068‑744921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGAGCTTTGCACCTCGTCATTCTCGATGCTCGCAAAGC > NC_002947/2217629‑2217768 TACGTGGCTGCGCCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACG < 3:63531/149‑1 GGCTGCGCCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAA < 4:194871/149‑1 CTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCG > 8:272644/1‑148 TGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGA > 3:242232/1‑149 CGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTC > 8:70161/1‑148 ACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAG < 1:56020/149‑1 ACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAG < 8:233402/149‑1 ACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAG < 5:118711/149‑1 CGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTC < 6:130835/149‑1 GGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGG < 4:242232/149‑1 GGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGG < 7:70161/149‑1 AGACTACGAAGCTCTTCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCTGATTTCGAGGTCTCTGGTAACAGTGGGCTCATG < 4:76663/149‑1 TACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCAT > 5:155460/1‑144 TACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCAT < 6:155460/144‑1 GAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAG < 7:272644/149‑1 CAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGCTTACGATGAAGTCGTGCTTGGCGGAGTTCGAGGTCTCTGGGAACACTGGGCTCATGAAATCCACTACAAGGTCGTCGCAGACAACCATCG > 5:123845/1‑148 GAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTTGTCTGCGACGACCATgtagt < 2:303466/149‑6 TTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGAGCTTTG > 1:148835/1‑149 gttGGGTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCAGGGAACAGTGGGCGCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGGATGGAAACCGGTCTCGGAGCTTTGCACCTCGTCATTCTCG < 6:123845/146‑1 GTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGA > 2:200414/1‑122 GTTCATGGATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGA < 1:200414/122‑1 ATCGGTTACGATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGAGCTTTGCACCTCGTCATTCTCGATGCTCGCAAAGC > 7:113292/1‑149 TACGTGGCTGCGCCACGTCCTGGAGCGACTGCCGCACGCCTCATCGGTAGCAGACTACGAAGCGCTGCTGCCATGGAACTGTTCGCCAGAGATGCCACGGTAACTTTGGCTTCCACCTTGTGGTAGGTGGGGTTCATGGATCGGTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/745068‑744921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAAGTCGTGCTTGGCGGATTTCGAGGTCTCTGGGAACAGTGGGCTCATGAAATCCACTACATGGTCGTCGCAGACAACCATCGCATGGAAACCGGTCTCGGAGCTTTGCACCTCGTCATTCTCGATGCTCGCAAAGC > NC_002947/2217629‑2217768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |