| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1204282 | 72 (1.220) | 4 (0.070) | 4/246 | NT | 5.9% | coding (625/645 nt) | gspN | type II secretion pathway protein GspN |
| ? | NC_002947 | = 1204318 | 59 (1.040) | intergenic (+16/+144) | gspN/PP_1056 | type II secretion pathway protein GspN/iron‑chelator utilization protein | |||||
GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1204131‑1204282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCGCCAGGGCCTGCGGTCCAAGCCATTGAGCCCCACGCAACAATGGCGTCAACTGCGCTTCAGGCTGCAGCTGGAACACCACCTGCACCTGGCGTCCTGGCAGGTCG < NC_002947/1204318‑1204173 GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGG > 4:241932/1‑149GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGG < 7:270133/149‑1 AGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGC < 7:70944/125‑1 AGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGC > 8:70944/1‑125 GTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCC < 7:166220/121‑1 GTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCC > 8:166220/1‑121 GGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCGCCAGGGCCTGCGGTCCAAGCCATTGAGCCCCACGCAACAATGGCGTCAACTGCGCTTCAGGCTGCAGCTGGAACACCACCTGCACCTGGCGTCCTGGCAGGTCG > 3:241932/1‑149 GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1204131‑1204282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCGCCAGGGCCTGCGGTCCAAGCCATTGAGCCCCACGCAACAATGGCGTCAACTGCGCTTCAGGCTGCAGCTGGAACACCACCTGCACCTGGCGTCCTGGCAGGTCG < NC_002947/1204318‑1204173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |