New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1295253 =	37 (0.630)	3 (0.050)	3/250	NT	6.1%	coding (995/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA
	?	NC_002947	1295292 =	57 (0.990)					coding (956/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA

GCTGGCAGGCATGACCGTAGACAGCTTCACCCACCCCGTGCCGATGGGCATCACGATCGGCCTGTTGCTGGGCAAGACCGTGGGGGTTTTCGGCCTGACCTGGGTGGCGGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1295402‑1295253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCAGCGAAACGCCGGCATTGGCAAAGGCGAAAATTGGCAGGA  >  NC_002947/1295292‑1295439                                                                                                                                                                                                                                                                                                            GCTGGCAGGCATGACCGTAGACAGCTTCACCCACCCCGTGCCGATGGGCATCACGATCGGCCTGTTGCTGGGCAAGACCGTGGGGGTTTTCGGCCTGACCTGGGTGGCGGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTT                                                                                                                                                       >  8:138091/1‑149               CCGTAGACAGCTTCACCCACCCCGTGCCGATGGGCATCACGATCGGCCTGTTGCTGGGCAAGACCGTGGGGGTTTTCGGCCTGACCTGGGTGGCGGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGT                                                                                                                                                        <  5:124831/134‑1               CCGTAGACAGCTTCACCCACCCCGTGCCGATGGGCATCACGATCGGCCTGTTGCTGGGCAAGACCGTGGGGGTTTTCGGCCTGACCTGGGTGGCGGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGT                                                                                                                                                        >  6:124831/1‑134                                                                                                             GGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGC                                           >  5:89125/1‑149                                                                                                               TCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTG                                                                                          <  1:256692/100‑1                                                                                                               TCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTG                                                                                          >  2:256692/1‑100                                                                                                                                                      GACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCAGCGAAACGCCGGCATTGGCAAAGGCGAAAATTGGCAGGA  >  7:254075/1‑149                                                                                                                                                                                                                                                                                                            GCTGGCAGGCATGACCGTAGACAGCTTCACCCACCCCGTGCCGATGGGCATCACGATCGGCCTGTTGCTGGGCAAGACCGTGGGGGTTTTCGGCCTGACCTGGGTGGCGGTCAAGCTGCGCCTAGCCGCGCTGCCTGCGGGCGCTGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1295402‑1295253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCAGCGAAACGCCGGCATTGGCAAAGGCGAAAATTGGCAGGA  >  NC_002947/1295292‑1295439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.