New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1295253 =	37 (0.630)	3 (0.050)	3/250	NT	6.1%	coding (995/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA
	?	NC_002947	1295292 =	57 (0.990)					coding (956/1194 nt)	nhaA‑I	Na(+)/H(+) antiporter NhaA

CACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCA  >  NC_002947/1295105‑1295400                                                                                                                                                     |                                                                                                                                                     tcctgccaattttcgcctttgccaatgccggcgtttcgctggcaggcatgaccgtagacagcttcacccaccccgtgccgatgggcatcacgatcggcctgttgctgggcaagaccgtgggggttttcggcctgacctgggtggcggtc                                                                                                                                                      >  7:254075‑M1/149‑149 (MQ=255)   ccGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCaa                                                                                                                                                    <  6:323182/149‑1 (MQ=255)        gcaAAGAACGAACCCTTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAgc                                                                                                                                               <  8:333974/149‑1 (MQ=255)             gaacgaacCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCCACCAGCGCCCg                                                                                                                                          >  8:43980/1‑149 (MQ=255)                       gTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAAAGCCGCAGCGTATCGCCACCCCCAGAATTTGGCCCCACGCACCCCCCGCAGGCCgcgc                                                                                                                                >  8:297765/1‑149 (MQ=255)                                 ccATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAggtg                                                                                                                       >  5:12013/1‑146 (MQ=255)                                     gCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCCCCCCCAGCATTTGCCCCCACCCCCCGCCCGCCGGCAGAGCGCCTcgccgcccca                                                                                                                  >  7:138091/1‑145 (MQ=255)                                          gcaggcatgaccgtagacagcttcacccaccccgtgccgatgggcatcacgatcggcctgttgctgggcaagaccgtgggggttttcggcctgacctgggtggcggtCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGAcc                                                                                                            >  5:89125‑M1/108‑149 (MQ=255)                                                        tCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCCCCCCCCGAAGTTGCCCCCACCCAGGGCCCGCAGGCCGGGCCGCTAGGCGC‑AGCGTGGCCGCCACCCGGGGCAg                                                                                              >  7:124883/1‑149 (MQ=255)                                                          aCTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGc                                                                                            <  6:312446/149‑1 (MQ=255)                                                            tGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCAGCCCCAGGATTTGCCCCCCACCCGCGCCCGCAGGCAGCGCGGCGAGCGGC‑CGCTGGACCGCCCCCCCGGGCAGGGCg                                                                                          >  6:187538/1‑149 (MQ=255)                                                                 cccGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGTGC‑AGCTTGACCGCCACCCAGGTCAGGCCGaaa                                                                                       <  6:12013/147‑1 (MQ=255)                                                                  ccGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCCCCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCGCCCAGGGCAGGCCGAAAccc                                                                                    >  6:124318/1‑149 (MQ=255)                                                                      ggCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCa                                                                                <  5:331672/149‑1 (MQ=255)                                                                       gCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCAGCAGAGTATCGACCCCCGCAGAATTTGCCCCCAGCCCGCGCCCGCCGGCAGCGGGGCTGGGCGC‑GGCGTGACCGCCCCCCCGGTCCGGCGGACAACCCCCAc                                                                               >  6:181089/1‑149 (MQ=255)                                                                             gcgagcgaGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAgg                                                                                                  <  7:87255/124‑1 (MQ=255)                                                                             gcgagcgaGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAgg                                                                                                  >  8:87255/1‑124 (MQ=255)                                                                                agcgagcCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCa                                                                                                        <  5:382365/115‑1 (MQ=255)                                                                                  cgagcCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCa                                                                    <  6:154712/149‑1 (MQ=255)                                                                                   gagcCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAg                                                                   <  1:348744/149‑1 (MQ=255)                                                                                       cTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCa                                                                 <  3:356244/147‑1 (MQ=255)                                                                                         cacgatcggcctgttgctgggcaagaccgtgggggttttcggcctgacctgggtggcggtCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGa                                                                                                              <  1:256692‑M1/40‑1 (MQ=255)                                                                                         cacgatcggcctgttgctgggcaagaccgtgggggttttcggcctgacctgggtggcggtCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGa                                                                                                              >  2:256692‑M1/61‑100 (MQ=255)                                                                                          cGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGGATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAgg                                                            <  7:81221/149‑1 (MQ=255)                                                                                                ggCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATc                                                      <  7:297765/149‑1 (MQ=255)                                                                                                   tCATGGTAAAGCCAATGCCGCAGAGTATCGCCCCCCCCAGGATTTGCCCCCCACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCCCCCCGGTCAGGGCGCACACCCCCCCGGGCTAGCGCCGCAACAGGCCgcgcggg                                                   >  6:349755/1‑143 (MQ=255)                                                                                                     aTGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTg                                                   <  5:349755/147‑1 (MQ=255)                                                                                                             gCCAATGCCGCAGAGTATCGCCCCGCGCAGAGTTTGGGGGCCGCCAGCGCGGGCGGGGCGCGCGGCGTGGGGC‑GGCTTGGCCGCCAGCGAGGGGAGGCCGATAACCCCCACCGTCTGGCCGAGACACCGGCCGAGCGTGGTGCCCaggg                                         >  8:58764/1‑146 (MQ=255)                                                                                                               cAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACg                                                                              <  5:323495/110‑1 (MQ=255)                                                                                                                aaTGCCGCAGAGTATCGCCATCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCa                                      >  5:277195/1‑149 (MQ=255)                                                                                                                 aTGCCGCAGAGTATCGCCACCCACAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCAc                                     <  8:124883/149‑1 (MQ=255)                                                                                                                            tATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGggtgggtg                           >  3:25661/1‑148 (MQ=255)                                                                                                                                   aCCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTc                   >  2:316268/1‑149 (MQ=255)                                                                                                                                     ccccAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGCGAGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTc                   >  1:279816/1‑148 (MQ=255)                                                                                                                                     ccccAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTa                 >  3:351576/1‑149 (MQ=255)                                                                                                                                     ccccAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTa                 >  2:36329/1‑149 (MQ=255)                                                                                                                                       ccAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGt                    <  2:322085/144‑1 (MQ=255)                                                                                                                                       ccAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGt                    >  1:322085/1‑144 (MQ=255)                                                                                                                                        cAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACgg              >  7:316862/1‑149 (MQ=255)                                                                                                                                        cAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACgg              >  7:322097/1‑149 (MQ=255)                                                                                                                                          gAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTc            <  2:279816/149‑1 (MQ=255)                                                                                                                                            aTTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAt          <  7:43980/149‑1 (MQ=255)                                                                                                                                                gCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcct      >  1:147882/1‑149 (MQ=255)                                                                                                                                                 cccccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcctg     >  2:282711/1‑149 (MQ=255)                                                                                                                                                 cccccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcct      <  5:181089/148‑1 (MQ=255)                                                                                                                                                  ccccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcctgc    <  1:282711/149‑1 (MQ=255)                                                                                                                                                  ccccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcctgc    >  3:94126/1‑149 (MQ=255)                                                                                                                                                   cccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCAtgcctgc    >  1:296290/1‑148 (MQ=255)                                                                                                                                                    ccAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAACCCCGCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCa  <  5:187538/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGGGCGAAGGCGAGCGAGCCTACGAACAGGCTCATGGTAAAGCCAATGCCGCAGAGTATCGCCACCCCCAGAATTTGCCCCCAACCAGCGCCCGCAGGCAGCGCGGCTAGGCGC‑AGCTTGACCGCCACCCAGGTCAGGCCGAAAACCCCCACGGTCTTGCCCAGCAACAGGCCGATCGTGATGCCCATCGGCACGGGGTGGGTGAAGCTGTCTACGGTCATGCCTGCCA  >  NC_002947/1295105‑1295400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.