New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1362407 | 65 (1.100) | 4 (0.070) | 3/240 | NT | 6.2% | coding (797/1347 nt) | phoQ | sensor protein |
? | NC_002947 | = 1362436 | 61 (1.100) | coding (826/1347 nt) | phoQ | sensor protein |
CCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362252‑1362407 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGA < NC_002947/1362436‑1362291 CCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCT > 8:316090/1‑149 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTT > 8:11671/1‑149 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTT < 5:117538/149‑1 ACGCGAGTTGCTGCGCCTTACCCGCTGGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCATGC > 1:10289/1‑149 GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAG > 3:320635/1‑147 TTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGC < 4:70042/148‑1 GCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 7:316090/148‑1 CAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG < 3:85211/103‑1 CAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 4:85211/1‑103 AGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 5:278907/144‑1 AGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA > 6:278907/1‑144 TACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGC < 6:83286/79‑1 TACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGC > 5:83286/1‑79 TGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGC < 2:18104/147‑1 GCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCGCGCTCACTGCGCAA > 3:292879/1‑148 CAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA > 5:301504/1‑147 CAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCCAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAAC > 8:311887/1‑148 AGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA > 4:320635/1‑146 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGA > 2:55807/1‑149 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCC < 6:170624/92‑1 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCC > 5:170624/1‑92 CCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362252‑1362407 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGA < NC_002947/1362436‑1362291 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |