| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1845868 | 53 (0.900) | 3 (0.050) | 3/244 | NT | 5.1% | coding (159/1377 nt) | pfeS‑II | histidine kinase |
| ? | NC_002947 | = 1845921 | 62 (1.100) | coding (212/1377 nt) | pfeS‑II | histidine kinase | |||||
CCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1845781‑1845868‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAACCCCGCAAGGTCTGGCGTGCCGGCTCCGAGAGGAAGGCATTCTGGGTTTCCATGTGCCGGCCCCAGGTATAACTGAGGCCGATCA < NC_002947/1845921‑1845774 CCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCAT < 5:107547/149‑1CCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCA > 8:289359/1‑148 AGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCCACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAA < 7:289359/147‑1 CGCCACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAACCCCGCAAGGTCTGGCGTGCCGGCTCCGAGAGGAAGGCTTTCTGGGTTTCCATGTGCCGGCCTCAGTTATACCTGGGGCCGg < 1:78219/149‑2 GCCACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAACCCCGCAAGGTCTGGCGTGCCGGCTCCGAGAGGAAGGCATTCTGGGTTTCCATGTGCCGGCCCCAGGTATAACTGAGGCCGAT > 1:26117/1‑149 CACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAACCCCGCAAGGTCTGGCGTGCCGGCTCCGAGAGGAAGGCATTCTGGGTTTCCATGTGCCGGCCCCAGGTATAACTGAGGCCGATCA > 6:122488/1‑149 CCTCAGTTATACCTGGGGCCGGCACATGGAAACCCAGAATGCCTTCCTCTCGGAGCCGGCACGCCAGACCTTGCGGGGTTATGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1845781‑1845868‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccACCCACTGGTCCAGCCCTGCCCGCCCGCCACTGCGCCAGGCCTGTTCAGCTTCGGCGGCATAACCCCGCAAGGTCTGGCGTGCCGGCTCCGAGAGGAAGGCATTCTGGGTTTCCATGTGCCGGCCCCAGGTATAACTGAGGCCGATCA < NC_002947/1845921‑1845774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |