| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1850759 = | 59 (1.000) | 5 (0.090) | 5/238 | NT | 8.0% | coding (1300/1359 nt) | rlmD | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD |
| ? | NC_002947 | 1850792 = | 60 (1.090) | coding (1333/1359 nt) | rlmD | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD | |||||
GTTTTACCTTTCCATGCAGCACACCATACGAGTGTGCTGGCGATCACCGTGCGGCCGCCCTTCCGTGGCAACCGCACCAAGGGGCCAGTCAGCTAGCCCGCTTCGAATAACGCCATGGCCTCGACATGCGCCGTCTGAGGAAACATGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1850910‑1850759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtcgagGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGC > NC_002947/1850792‑1850939 GTTTTACCTTTCCATGCAGCACACCATACGAGTGTGCTGGCGATCACCGTGCGGCCGCCCTTCCGTGGCAACCGCACCAAGGGGCCAGTCAGCTAGCCCGCTTCGAATAACGCCATGGCCTCGACATGCGCCGTCTGAGGAAACATGT < 3:373066/148‑1 TTTTACCTTTCCATGCAGCACACCATACGAGTGTGCTGGCGATCACCGTGCGGCCGCACTTCCGTTGCAACCGCACCAAGGGGCCAGTCAGCTAGCCCGCTTCGAATAACGCCATGGCCTCGACATGCGCCGTCTGAGGAAACATGTC > 5:267596/1‑148 CATGGCCTCGACATGCGCCGTCTGAGGAAACATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCAC > 5:298359/1‑110 CATGGCCTCGACATGCGCCGTCTGAGGAAACATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCAC < 6:298359/110‑1 GCCTCGACATGCGCCGTCTGAGGAAACATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCAC < 3:359204/90‑1 GCCTCGACATGCGCCGTCTGAGGAAACATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCAC > 4:359204/1‑90 CTCGACATGCGCCGTCTGAGGAAACATGTCGAGGCCATGGCGTTATTCGAAGAGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTA > 8:258162/1‑148 ATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTG < 5:313929/149‑1 GAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACC < 4:373066/148‑1 GAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCAC > 5:12775/1‑147 GAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCAC > 8:7734/1‑147 GGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGC < 8:144080/149‑1 GTTTTACCTTTCCATGCAGCACACCATACGAGTGTGCTGGCGATCACCGTGCGGCCGCCCTTCCGTGGCAACCGCACCAAGGGGCCAGTCAGCTAGCCCGCTTCGAATAACGCCATGGCCTCGACATGCGCCGTCTGAGGAAACATGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1850910‑1850759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtcgagGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGC > NC_002947/1850792‑1850939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |