New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1967177	31 (0.520)	6 (0.140)	7/190	NT	17.4%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967207	34 (0.780)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase

GGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967002‑1967177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggcttgcccgctcccacaggCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTCCAGG  <  NC_002947/1967207‑1967061                                                                                                                                                                                                                                                                                                                                      GGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGC                                                                                                                                                                                  <  1:107528/147‑1        GGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCG                                                                                                                                                                         <  2:53742/149‑1        GGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGCATCGGCCTCTTCGCG                                                                                                                                                                         >  5:255285/1‑149         GACCGAGTTGCGCAGGGCGATCTGCAAGAGGTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGG                                                                                                                                                                        <  6:274933/149‑1            CGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCT                                                                                                                                                                     >  2:164320/1‑149            CGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCT                                                                                                                                                                     >  6:110767/1‑149              AGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGCTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTT                                                                                                                                                                    <  1:83729/149‑1               GTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGC                                                                                                                                                                  >  5:89156/1‑149                TTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCC                                                                                                                                                                 <  4:152584/149‑1                  GCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCG                                                                                                                                                               >  6:185137/1‑149                      AGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCC                                                                                                                                                           >  3:192435/1‑149                           GATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                      >  7:304498/1‑149                           GATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                      >  6:107299/1‑149                                GCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGGCCGCTCCCCCAGGgtca                                                                                                                                                 >  7:311947/1‑145                                GCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCCCAGGCtca                                                                                                                                                 >  5:120897/1‑146                                 CAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                      <  8:304498/143‑1                                 CAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                      <  1:164320/143‑1                                                   GTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTG                                                                                                                              >  7:293448/1‑149                                                         GTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGA                                                                                                                        >  2:293242/1‑149                                                                 AGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGG                                                                                                                <  1:293242/149‑1                                                                  GCGCGGCATGCAGCTGGCAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGG                                                                                                               <  4:264699/149‑1                                                                   CGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGCATCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGA                                                                                                              <  6:255285/149‑1                                                                    GCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAG                                                                                                             <  8:293448/149‑1                                                                                                                                                     CTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCGTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGC                             >  5:110767/1‑149                                                                                                                                                        TTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCGTGAGGGTTGCGGGGATCCGGTGGGGGCGGGCAAGCCCGCGAAGAGGCCGGGACAGGGAAGCGCTCCGCCCGCCGCCAACCCCGGCCGCCTACGGCCTTGCGGGCGgcac                          >  8:271360/1‑145                                                                                                                                                        TTCGCGGGCTGGCCCGCTCCCACCGCCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGC                             <  7:271360/146‑1                                                                                                                                                                    ccgGCTCCCACCGCCCGGGCGCAATCCTTGAGGGTGGCGGGGAGCCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATG              <  5:145997/146‑1                                                                                                                                                                     CCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCC                       <  5:5123/139‑1                                                                                                                                                                     CCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCC                       >  6:5123/1‑139                                                                                                                                                                     CCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATG              >  5:107299/1‑148                                                                                                                                                                        CTCCCCCCGGCAGGGCGCAATCCTTGTGGGTGGCGGGGACCCTGTGGGCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGC          <  3:96615/149‑1                                                                                                                                                                           CCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCT       >  4:101472/1‑149                                                                                                                                                                            CACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCT       >  5:388296/1‑148                                                                                                                                                                              CAGGAAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTCCA    <  6:377469/149‑1                                                                                                                                                                               AGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTCCAG   <  6:388296/149‑1                                                                                                                                                                                 GCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTCCAGG  >  4:192435/1‑148                                                                                                                                                                                                                                                                                                                                      GGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCG‑TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1967002‑1967177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggcttgcccgctcccacaggCAGGGCGCAATCCTTGAGGGTTGCGGTGATCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGAAAGCGATCAGCCCGCAGCCAACGCCGGCCGCATACGGCCTTGCTGGCGCCCTTCCAGCTGCATGCAGCGCTCCAGG  <  NC_002947/1967207‑1967061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.