New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1967177	31 (0.520)	6 (0.140)	7/190	NT	17.4%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967207	34 (0.780)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase

CCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTC  >  NC_002947/1967061‑1967354                                                                                                                                                   |                                                                                                                                                    ccTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGc                                                                                                                                                    >  4:192435‑M2/1‑147 (MQ=255)  cTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcct                                                                                                                                                  <  6:388296‑M2/149‑4 (MQ=255)   tGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTTcctg                                                                                                                                                 <  6:377469‑M2/149‑5 (MQ=255)      aGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgg                                                                                                                                              >  4:101472‑M2/1‑142 (MQ=255)      aGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtg                                                                                                                                               >  5:388296‑M2/1‑142 (MQ=255)         gcTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCGCCCACAGGGTCCCCGCCACCCACAAGGATTGCGCCCTGccggggggag                                                                                                                                           <  3:96615‑M2/149‑11 (MQ=255)             catgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCCCAGGCTCCCCGCCACCCTCAAGGATTGCGCCCGGgcggtgggagccgg                                                                                                                                       <  5:145997‑M2/149‑15 (MQ=255)             catgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAATCCTTGAGGGTTGCGGTGATcctgtgggagcgg                                                                                                                                        >  5:107299‑M2/1‑135 (MQ=255)                      ggAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgg                                                                                                                                        >  6:5123‑M2/1‑126 (MQ=255)                      ggAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgg                                                                                                                                        <  5:5123‑M2/139‑14 (MQ=255)                       gacgggCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTCCCCGGGCTTGCCCGCTCCCACCGGATCACCGCAACCCTCAAGGATGGCGCCCTGCCTGTGGGAGCGGGCAAGCCcgc                                                                                                                              <  6:224502/145‑1 (MQ=39)                         gtgccgcccgcAAGGCCGTAGGCGGCCGGGGTTGGCGGCGGGCGGAGCGCTTCCCTGTCCCGGCCTCTTCGCGGGCTTGCCCGCCCCCACCGGATCCCCGCAACCCTCACGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaa                                                                                                                           >  8:271360‑M2/5‑123 (MQ=255)                            gcgcCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCACGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagag                                                                                                                        >  5:110767‑M2/1‑120 (MQ=255)                            gcgcCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGgcggtgggagcgggccagcccgcgaa                                                                                                                           <  7:271360‑M2/146‑27 (MQ=255)                                      ggCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCACAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAg                                                                                                              >  6:73641/1‑149 (MQ=255)                                          gtcgggggcggggGTTGGGTGGGGGCGGAGCGCTTTCCTGACCCGCCCTCTTCGCGGGCTTGCCCGCTCCCACCGCATCCCCCAACCCCTCATGGATTGCGCCCTGCCTGGGGGCGGGGGAACGCCCGCGAAGAGGCCGATGCAGGttt                                                                                                          <  4:96615/143‑1 (MQ=255)                                                     gcGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTg                                                                                               <  5:73641/149‑1 (MQ=255)                                                       gTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATAACCGCCACCCTCAAGGATTGCGCCCTGGCTGTGGGAGCCGGCAAGCCCGCGAACAGGCCGATGCAGGTTTATTGGGCGTTGaa                                                                                             >  5:300242/1‑149 (MQ=38)                                                            gtGCGGGCTGATCGCTTTCCGTTACCGGCCTCTTCGCGGGCTTGCCGGCTCCCACAGTATCACCGAAACCCTCATGTATTGCGCCCTGCGTGTGGGAGGGGGCATGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCt                                                                                        <  8:177289/148‑1 (MQ=38)                                                                    tGATCGCTTTCCTGTACCGGCCTCTGCGCGGGCTTGCCCGCTCCCACTGTATCACCGCAACCCTCAAGGTTTGCGCCCTGCCTGTGGGTGGGGGCATGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTc                                                                                <  6:156122/149‑1 (MQ=38)                                                                     gATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCCCAGGATCCCCGCAACCCGGAAGGATTGCGCCCGGCCTGGGGGAGCGGGCCAGCCCGCGCAGAGGCCGCTGCAGGTTTTTTGGGCGTTGAACGCCTGCCCGGTcc                                                                               >  7:353827/1‑148 (MQ=37)                                                                      tgcGCTTTCCTGTCCCGGCCGCTTCGCGGCCTTGCCCGGTCCCCCCGCATCACCCCACCCCTCACGTATTGCGCCCGGCCTTGGGGTGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCa                                                                               <  6:298515/146‑1 (MQ=255)                                                                      aTCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCa                                                                               <  5:377469/148‑1 (MQ=255)                                                                                   cccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCACCCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGt                                                                                                 <  3:262236/116‑1 (MQ=255)                                                                                   aCCGGCCTCTTCGCGGGCTTTCCCGCTCCCACAGGATAACCCCAACCCTCAAGGATTGCGCCCTGCCGGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGCTGCAGGTTTATTGGGGGt                                                                                                 >  4:262236/1‑117 (MQ=25)                                                                                               gcgGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcagg                                                     >  3:108602/1‑149 (MQ=255)                                                                                               gcgGGCTTGCCCGCTCACACAGGATCACCGCAACCCTAAAGGATTGCGCCCTGCCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGATTCAGGTTTATTGTGCGTTGAACGCCTTCCCGTTCACCCCAGTGCAGTCCGGCCCCAAcatg                                                     >  4:244924/1‑147 (MQ=37)                                                                                                cgGGCTTGCCCGCTCCCACAGGATCACCCCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGGTTATTGGGCGTTGAACGCCTGCCCGTTCCCCCCTGTGCTGTCCGGGCCCCTcagg                                                     >  3:326665/1‑148 (MQ=38)                                                                                                    cTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTTGGAGGGGGCAAGCCCGAGAAGAGGCCGATTCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacag                                                <  3:244924/149‑1 (MQ=255)                                                                                                       gCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacaggta                                             >  7:159022/1‑149 (MQ=255)                                                                                                         ccGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAggtacaggtaca                                           >  6:214631/1‑149 (MQ=255)                                                                                                            cTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagc                                        <  8:293448‑M2/149‑110 (MQ=255)                                                                                                            cTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCg                                        <  8:159022/149‑1 (MQ=255)                                                                                                             tCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccgatgcaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcg                                       <  6:255285‑M2/149‑111 (MQ=255)                                                                                                              cccACCGTATCACCGCACCCCTCAAGGATTGCGCCCTGCCTGGGGGTGGGGGAAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGc                                      <  4:326665/149‑1 (MQ=255)                                                                                                              cccACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgccctgccagctgcatgccgcgc                                      <  4:264699‑M2/149‑112 (MQ=255)                                                                                                               ccACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgct                                     <  1:293242‑M2/149‑113 (MQ=255)                                                                                                               ccACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCa                                     <  4:108602/149‑1 (MQ=255)                                                                                                                       tCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgctccaggaac                             >  2:293242‑M2/1‑29 (MQ=255)                                                                                                                         accccaccccACACGGATGCCGCCCTGCGGGTGGCAGCGGGAAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTc                           <  8:353827/149‑1 (MQ=255)                                                                                                                           cgaatcccTCAAGTATTGGGCCCTGCGTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTc                           <  6:300242/142‑1 (MQ=255)                                                                                                                             cAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgctccaggaacaggaac                       >  7:293448‑M2/1‑23 (MQ=255)                                                                                                                                 ccTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCg                   >  6:375639/1‑149 (MQ=255)                                                                                                                                   tCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCggg                 >  6:121433/1‑149 (MQ=255)                                                                                                                                   tCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCggg                 >  4:231640/1‑149 (MQ=255)                                                                                                                                   tCAAGGATTGCGCACTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCggg                 >  8:12882/1‑149 (MQ=255)                                                                                                                                    cAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGgt                >  8:200789/1‑149 (MQ=255)                                                                                                                                     aaGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCggg                 <  5:375639/147‑1 (MQ=255)                                                                                                                                         aTTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTc           <  3:231640/149‑1 (MQ=255)                                                                                                                                             cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacagg                                               >  4:238885/1‑109 (MQ=255)                                                                                                                                             cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacagg                                               <  3:238885/109‑1 (MQ=255)                                                                                                                                             cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCg       <  7:200789/149‑1 (MQ=255)                                                                                                                                             cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCg       >  2:321517/1‑149 (MQ=255)                                                                                                                                              gcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCgg      >  5:77130/1‑149 (MQ=255)                                                                                                                                                tgagcctgggggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgctccaggaacaggaacatgcagtcgtaactcttgc    >  5:120897‑M2/4‑4 (MQ=255)                                                                                                                                                  tgcctgTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTtc  >  1:363189/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTC  >  NC_002947/1967061‑1967354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.