| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2975706 = | 57 (0.960) | 4 (0.070) | 4/246 | NT | 6.9% | coding (724/1053 nt) | ligC | 4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase |
| ? | NC_002947 | 2975794 = | 54 (0.950) | coding (812/1053 nt) | ligC | 4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase | |||||
TTCCGAACTTTGCAACAGGGGCGTATGCCAGCCCGAGCCTGCCTCGGCGTAATGCCAGCGCTTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2975858‑2975706‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGGTGAACAGGCGCCGCTGATC > NC_002947/2975794‑2975939 TTCCGAACTTTGCAACAGGGGCGTATGCCAGCCCTAGACTGACTCGGCGTAATGCCAGAGCTTGAGCTGGGGAATGCTCAGTGCACATTGGGTACCGGCAAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGTGCTTTCGC > 4:356099/1‑149 CGAACTTTGCAACAGGGGCGTATGCCAGCCCGAGCCTGCCTCGGCGTAATGCCAGCGCTTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAG > 3:138229/1‑149 GAACTTTGCAACAGGGGCGTATGCCAGCCCGAGCCTGCCTCGGCGTAATGCCAGCGCTTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGC < 8:181193/149‑1 GCTTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCACATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGC > 5:244983/1‑148 TTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCA > 2:266857/1‑147 GTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATTCGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCAT < 1:266857/149‑1 TAGCAGGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAATGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTG < 6:244983/148‑1 CAGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGGTGAACAGGCGCCGCTGAT > 8:338016/1‑149 AGCTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGGTGAACAGGCGCCGCTGATC < 7:104973/149‑1 CTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGG > 1:308675/1‑128 CTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGG < 2:308675/128‑1 TTCCGAACTTTGCAACAGGGGCGTATGCCAGCCCGAGCCTGCCTCGGCGTAATGCCAGCGCTTGAGCTGGGGAATGCTCAGTGCACCTTGGGTACCGGCCAGCAGATAGCACGGCTGGCCATCCTGGCGCGGGTACACGGGGCTTTCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2975858‑2975706‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcTCAAGCGCTGGCATTACGCCGAGGCAGGCTCGGGCTGGCATACGCCCCTGTTGCAAAGTTCGGAAAGCATCCCTGCCGGCGAGGCATTGACCCTGCAATTGCAGCATTTTGTGCGTGTTGCCCGGGGTGAACAGGCGCCGCTGATC > NC_002947/2975794‑2975939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |