| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3153510 | 48 (0.810) | 4 (0.070) | 4/242 | NT | 8.4% | coding (771/990 nt) | PP_2769 | branched‑chain amino acid ABC transporter permease |
| ? | NC_002947 | = 3153536 | 42 (0.750) | coding (797/990 nt) | PP_2769 | branched‑chain amino acid ABC transporter permease | |||||
CTTTTGCCATCAGCGGCTTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3153356‑3153510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggaacAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATGCTGCCCAGGCCGCCGATAATGATGATGAACAGGATCTGGAACGAGCGGTTCAGGTCGAAGCCGTGTGGCTCCA < NC_002947/3153536‑3153425 CTTTTGCCATCAGCGGCTTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGTGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTC < 1:243439/149‑1 CCATCAGCGGCTTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAAC > 6:120900/1‑149 TTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGA < 7:110091/136‑1 TTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGA > 8:110091/1‑136 gacccaCACCTACCCCCGCACCGTCGAGCCACCCGGCTTCGACCTGAACCGCTCGCTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACAGCACGATGATGGCGGCGCCGAGGAAGTTCCCGAGGATGC < 6:287070/143‑1 CTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGA > 3:81552/1‑104 CTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGA < 4:81552/104‑1 CACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACAGCACGATGATGGCGGCGCCGAGGAAGTTCCCGAGGATGC > 5:287070/1‑143 ACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATG < 1:230966/107‑1 ACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATG > 2:230966/1‑107 CGGGAACAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATGCTGCCCAGGCCGCCGATAATGATGATGAACAGGATCTGGAACGAGCGGTTCAGGTCGAAGCCGTGTGGCTCCA < 1:162593/119‑1 CGGGAACAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATGCTGCCCAGGCCGCCGATAATGATGATGAACAGGATCTGGAACGAGCGGTTCAGGTCGAAGCCGTGTGGCTCCA > 2:162593/1‑119 CTTTTGCCATCAGCGGCTTCTACCTCGGCGTGGCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3153356‑3153510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggaacAGCACGATGAAGGCGGCGCCGAGGAAGTTCCCGAGGATGCTGCCCAGGCCGCCGATAATGATGATGAACAGGATCTGGAACGAGCGGTTCAGGTCGAAGCCGTGTGGCTCCA < NC_002947/3153536‑3153425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |