New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3153510	48 (0.810)	4 (0.070)	4/242	NT	8.4%	coding (771/990 nt)	PP_2769	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 3153536	42 (0.750)					coding (797/990 nt)	PP_2769	branched‑chain amino acid ABC transporter permease

GCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTG  >  NC_002947/3153388‑3153683                                                                                                                                                     |                                                                                                                                                    gCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCt                                                                                                                                                     <  4:92382/149‑1 (MQ=255)               ggCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGtgctg                                                                                                                                        <  8:30994/148‑1 (MQ=255)                gCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTgctgct                                                                                                                                      >  3:187808/1‑149 (MQ=255)                  cTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGt                                                                                                                                    <  2:216230/149‑1 (MQ=255)                               ggCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCgg                                                                                                                       <  1:72715/149‑1 (MQ=255)                                  aCGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGtt                                                                                                                    <  5:120900/149‑1 (MQ=255)                                  aCGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGtt                                                                                                                    >  6:181166/1‑149 (MQ=255)                                     gTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTtgct                                                                                                                 <  4:234152/149‑1 (MQ=255)                                      tGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTgttcccg                                                                                                                                              >  2:162593‑M2/1‑112 (MQ=255)                                      tGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTgttcccg                                                                                                                                              <  1:162593‑M2/119‑8 (MQ=255)                                        gAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGcc                                                                                                              >  3:96281/1‑149 (MQ=255)                                          gCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGa                                                                                                            >  6:250101/1‑149 (MQ=255)                                           ccACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGtgctg                                                                                                                                        >  7:275891/1‑120 (MQ=255)                                           ccACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGtgctg                                                                                                                                        <  8:275891/120‑1 (MQ=255)                                             acacGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTg                                                                                                         <  6:40273/149‑1 (MQ=255)                                                    ttCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGAt                                                                                                  >  4:107352/1‑149 (MQ=255)                                                         ccTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATg                                                                                             >  7:122041/1‑149 (MQ=255)                                                         ccTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATg                                                                                             >  3:367075/1‑149 (MQ=255)                                                           tGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGcc                                                                                           >  7:293855/1‑149 (MQ=255)                                                               ccGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAAc                                                                                                                               >  8:196113/1‑109 (MQ=255)                                                               ccGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAAc                                                                                                                               <  7:196113/109‑1 (MQ=255)                                                                  cTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCggg                                                                                        >  4:207461/1‑145 (MQ=255)                                                                     gTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATag                                                                                 <  4:187808/149‑1 (MQ=255)                                                                         cAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGaa                                                                             <  4:367075/149‑1 (MQ=255)                                                                          aGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAAc                                                                            <  6:209418/149‑1 (MQ=255)                                                                           gATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAAcc                                                                           <  8:122041/149‑1 (MQ=255)                                                                             tCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTg                                                                         <  4:96281/149‑1 (MQ=255)                                                                                tGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTg                                                                         >  3:342637/1‑146 (MQ=255)                                                                                 gTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCag                                                                      >  3:180805/1‑148 (MQ=255)                                                                                      tcatcatTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGAtt                                                                <  4:342637/149‑1 (MQ=255)                                                                                         tcatTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGcc                                                             <  3:207461/149‑1 (MQ=255)                                                                                           atTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCtt                                                           <  8:293855/149‑1 (MQ=255)                                                                                                  gcggcCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACg                                                    >  6:45436/1‑149 (MQ=255)                                                                                                     gcCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCt                                                  >  2:347774/1‑148 (MQ=255)                                                                                                            cagcaTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGatcatca                                          >  5:234926/1‑149 (MQ=255)                                                                                                             agcaTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGatcatcat                                         <  5:181166/149‑1 (MQ=255)                                                                                                              gcaTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGatcatcatc                                        >  2:43964/1‑149 (MQ=255)                                                                                                              gcaTCCTCGGGAACTTCCTCGGCGCCGCCATCATCGTGCTgttcccgaggatgctgcccaggccgccgataatgatgatgaacaggatctggagcgagcggttcaggtcgaagccgggtggctcgacggtgcgggggtaggtgtgggtc                                        <  6:287070‑M2/149‑110 (MQ=255)                                                                                                              gcaTCCTCGGGAACTTCCTCGGCGCCGCCATCATCGTGCTgttcccgaggatgctgcccaggccgccgataatgatgatgaacaggatctggaacgagcggttcaggtcgaagccgtgtggctccaccgtgcccaggtaggtg                                              >  5:287070‑M2/1‑40 (MQ=255)                                                                                                               caTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTgttcccgaggatgctgcccaggccgccgataatgatgatgaacaggatctggaacgagcggttcaggt                                                                                 >  2:230966‑M2/1‑39 (MQ=255)                                                                                                               caTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTgttcccgaggatgctgcccaggccgccgataatgatgatgaacaggatctggaacgagcggttcaggt                                                                                 <  1:230966‑M2/107‑69 (MQ=255)                                                                                                               caTCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCt                                       >  2:304734/1‑149 (MQ=255)                                                                                                                   cTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCt                                   <  1:288301/149‑1 (MQ=255)                                                                                                                         aaCTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCaa                             <  4:180805/149‑1 (MQ=255)                                                                                                                          aCTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAg                            <  5:250101/149‑1 (MQ=255)                                                                                                                            ttCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAgg                           >  2:121894/1‑148 (MQ=255)                                                                                                                             tCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGaa                         >  1:182122/1‑149 (MQ=255)                                                                                                                                               tCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGgcgcgc       >  3:155123/1‑149 (MQ=255)                                                                                                                                               tCGTGCTGTTCCCGGTGCTGCTGTCGAAACTGAACGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGAAGATAGAGAACCTGAAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGgcgcgc       >  7:238758/1‑149 (MQ=255)                                                                                                                                                    cTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTg  <  1:347774/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCGGTTCGCTCTGGGCCTTCACCTACCTGGGCACGGTGGAGCCACACGGCTTCGACCTGAACCGCTCGTTCCAGATCCTGTTCATCATCATTATCGGCGGCCTGGGCAGCATCCTCGGGAACTTCCTCGGCGCCGCCTTCATCGTGCTGTTCCCGGTGCTGCTGTCGAACCTGGCCGGGTTGCTGCCGACTGGGCTGATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTG  >  NC_002947/3153388‑3153683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.