New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3649389	69 (1.170)	6 (0.110)	5/244	NT	8.5%	intergenic (+866/+825)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	= 3649415	64 (1.140)					intergenic (+892/+799)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase

AGCGACCTGCCAGCCCATCTGTGCCAGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3649256‑3649389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGGGCAACTG  <  NC_002947/3649415‑3649376                                                                                                                                                                                AGCGACCTGCCAGCCCATCTGTGCCAGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAG                           >  2:333899/1‑149      CCTGCCAGCCCATCTGTGCCAGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAGCCGCC                      >  6:295794/1‑149                      TGCCAGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGG         <  5:295794/146‑1                          AGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGGGCAACTG  <  1:333899/149‑1                          AGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGG         >  7:69197/1‑142                          AGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGGTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGG         <  8:69197/142‑1                                                                                                                                                                                AGCGACCTGCCAGCCCATCTGTGCCAGCCACGAGGCGCTCATGTTGGCGCGCACGCCATCGTCGTCCACCAGCGCGATGCGCGCCCCGCGCACACTGGCGACGTGGTCGGTCTCTTGAACCAGTTGCCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3649256‑3649389 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggTCATCTGCCGGGCAGCCGCCCGGTGCCCGGCGGGCAACTG  <  NC_002947/3649415‑3649376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.