New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3766125 =	52 (0.880)	3 (0.050)	3/238	NT	6.2%	coding (456/873 nt)	PP_5599	LysR family transcriptional regulator
	?	NC_002947	3766174 =	43 (0.780)					coding (505/873 nt)	PP_5599	LysR family transcriptional regulator

GTACTGCTGGGCAATCTGCCCACCCCAGGCATGTGAGTCATATCGAATCAGGTTTCGACCAAGAATCGTCGAGCGGATGTCGCGCTTGTCAACGGGGTCTTTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3766278‑3766125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcttttgACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAG  >  NC_002947/3766174‑3766272                                                                                                                                                                                                                                                               GTACTGCTGGGCAATCTGCCCACCCCAGGCATGTGAGTCATATCGAATCAGGTTTCGACCAAGAATCGTCGAGCGGATGTCGCGCTTGTCAACGGGGTCTTTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGC                                                                                                          >  4:187913/1‑149     TGCTGGGCAATCTGCCCACCCCAGGCATGTGAGTCATATCGAATCAGGTTTCGACCAAGAATCGTCGAGCGGATGTCGCGCTTGTCAACGGGGTCTTTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTT                                                                                                      >  7:295408/1‑149                                                                                                       GGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCC     >  6:122984/1‑148                                                                                                        GTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGAATCGATATGACTCACATGCCTGGGGTGGGCAGATTGCC     >  7:92872/1‑147                                                                                                         TCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCCAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAG  >  7:170878/1‑149                                                                                                                                                                                                                                                               GTACTGCTGGGCAATCTGCCCACCCCAGGCATGTGAGTCATATCGAATCAGGTTTCGACCAAGAATCGTCGAGCGGATGTCGCGCTTGTCAACGGGGTCTTTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3766278‑3766125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcttttgACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAG  >  NC_002947/3766174‑3766272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.