New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3766125 =	52 (0.880)	3 (0.050)	3/238	NT	6.2%	coding (456/873 nt)	PP_5599	LysR family transcriptional regulator
	?	NC_002947	3766174 =	43 (0.780)					coding (505/873 nt)	PP_5599	LysR family transcriptional regulator

GCTACGCATCACGCCAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGG  >  NC_002947/3766026‑3766321                                                                                                                                                     |                                                                                                                                                    ctgggcaatctgcccaccccaggcatgtgagtcatatcgaatcaggtttggaccaagaatcgtcgagcggatgtcgcgcttgtcaacggggtctttggtCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGa                                                                                                                                                     >  7:170878‑M1/100‑149 (MQ=255)    ggcaatctgcccaccccaggcatgtgagtcatatcgattcaggtttcgaccaagaatcgtcgagcggatgtcgcgcttgtcaacggggtctttggtCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGAc                                                                                                                                                    >  7:92872‑M1/97‑147 (MQ=255)    ggcaatctgcccaccccaggcatgtgagtcatatcgaatcaggtttcgaccaagaatcgtcgagcggatgtcgcgcttgtcaacggggtctttggtCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGAcc                                                                                                                                                   >  6:122984‑M1/97‑148 (MQ=255)    aCGCATCACGCCAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGAcc                                                                                                                                                   >  5:300591/1‑148 (MQ=255)      gCATCACGCCAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCaaa                                                                                                                                                <  6:300591/149‑1 (MQ=255)         tCACGCCAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGAc                                                                                                                                             <  6:113304/149‑1 (MQ=255)               cAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGtt                                                                                                                                       <  4:280028/149‑1 (MQ=255)                  gggACTCGCGCAGTCTTTACGAACAAGTAGCCTTCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGAc                                                                                                                                    <  5:257506/149‑1 (MQ=255)                   ggACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAAACCCCGTTGAc                                                                                                                                    >  1:319382/1‑148 (MQ=255)                               tCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGtt                                                                                                                                       >  4:252019/1‑133 (MQ=255)                               tCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGtt                                                                                                                                       <  3:252019/133‑1 (MQ=255)                               tCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATcc                                                                                                                       >  5:200513/1‑149 (MQ=255)                                 tttACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGc                                                                                                                     >  7:120531/1‑149 (MQ=255)                                   tACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTc                                                                                                                   >  2:220761/1‑149 (MQ=255)                                          aaGTAGCCTGCGTAGAGATCGATGCGGGATTCATGGTATGTCCGCCCTTCAGCGTACCCAAAAGCATTCGTTTACAGGTTCTTCGAGAAGAAACCCTGATGCTTTTGACCAAAGACCCCGTTGACATGCGCGACATCCGCTCGACGAtg                                                                                                            >  6:355626/1‑148 (MQ=255)                                           aGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTc                                                                                                           <  1:86822/149‑1 (MQ=255)                                              agacTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTg                                                                                                        <  4:52882/146‑1 (MQ=255)                                                 cTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTc                                                                                                     <  3:66800/149‑1 (MQ=255)                                                      gagaGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGtt                                                                                                                                       <  6:101982/110‑1 (MQ=255)                                                      gagaGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGtt                                                                                                                                       >  5:101982/1‑110 (MQ=255)                                                      gagaGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAAc                                                                                                <  7:91265/149‑1 (MQ=255)                                                        gagCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCt                                                                                              <  1:220761/149‑1 (MQ=255)                                                           cTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTATTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGAt                                                                                           >  8:137703/1‑149 (MQ=255)                                                             cGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTc                                                                                         >  1:364443/1‑149 (MQ=255)                                                              gATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTc                                                                                         <  2:319382/148‑1 (MQ=255)                                                               aTGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGa                                                                                       >  5:143864/1‑149 (MQ=255)                                                                            ggTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAAc                                                                                                <  4:365705/127‑1 (MQ=255)                                                                            ggTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAAc                                                                                                >  3:365705/1‑127 (MQ=255)                                                                            ggTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGa                                                                                            <  3:372188/131‑1 (MQ=255)                                                                            ggTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGa                                                                                            >  4:372188/1‑131 (MQ=255)                                                                                tGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTg                                                                      >  3:155560/1‑149 (MQ=255)                                                                                  tCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTggg                                                                    >  8:295408/1‑149 (MQ=255)                                                                                   ccGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAACCCTGATTCGATATGACTCACATGCCTgggg                                                                   >  4:91998/1‑149 (MQ=255)                                                                                    cGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGt                                                                  <  3:91998/149‑1 (MQ=255)                                                                                     gCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGAGTCCCATGCGTGGGGTg                                                                 >  4:203929/1‑149 (MQ=255)                                                                                        cTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCTCTCGACGATTCTTGTTCGAAACCTGCTTCGATATGACTCACATGCCTGGGGTggg                                                               >  8:105768/1‑148 (MQ=255)                                                                                        cTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGACTGGGGTggg                                                               >  3:86510/1‑148 (MQ=255)                                                                                                tCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGcc                                                      <  6:143864/149‑1 (MQ=255)                                                                                                 ggtcaaaagcatcaggggttcttctcgaagaacctgtatacgaatgcttttgACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGcc                                                      >  6:122984‑M2/53‑148 (MQ=255)                                                                                                  gtcaaaagcatcaggggttcttctcgaagaacctgtatacgaatgcttttgACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGAATCGATATGACTCACATGCCTGGGGTGGGCAGATTGcc                                                      >  7:92872‑M2/52‑147 (MQ=255)                                                                                                   tcaaaagcatcaggggttcttctcgaagaacctgtatacgaatgcttttgACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCCAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCcag                                                   >  7:170878‑M2/51‑149 (MQ=255)                                                                                                   ccAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCcag                                                   >  2:80062/1‑149 (MQ=255)                                                                                                     aaaaGCATTCGTATACAGGTTCTTCGAGAACAACCACTGATGCTTTTCACCAAAGACCCCGTAGACAAGCGCGACATCCGCTAGACGAATATACGTAGAAACCTGAATCAATATCACTAACATCCCTGGGGTGGCCAGAATgacaag                                                   >  5:312655/1‑142 (MQ=255)                                                                                                     AAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCcagca                                                 >  7:295408‑M1/1‑149 (MQ=255)                                                                                                         GCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTAc                                             >  4:187913‑M1/1‑149 (MQ=255)                                                                                                               gTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaat                                       <  7:216294/149‑1 (MQ=255)                                                                                                                tataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTggg                                                               >  1:32697/1‑124 (MQ=255)                                                                                                                tataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTggg                                                               <  2:32697/124‑1 (MQ=255)                                                                                                                tataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTa                                              >  7:18611/1‑141 (MQ=255)                                                                                                                tataCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTa                                              <  8:18611/141‑1 (MQ=255)                                                                                                                  taCAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCCTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgac                                    <  8:120531/149‑1 (MQ=255)                                                                                                                                    aaCCCCTGATGCTTTTGACCACAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGAt                  <  6:200513/149‑1 (MQ=255)                                                                                                                                        ccTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgacaatgac                              >  6:389586/1‑133 (MQ=255)                                                                                                                                        ccTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGaatgacaatgac                              <  5:389586/133‑1 (MQ=255)                                                                                                                                                     aCCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTgg  <  2:364443/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCTACGCATCACGCCAGGGGACTCGCGCAGTCTTTACGAACAAGTAGCCTGCGGAGAGCTCGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTCGATATGACTCACATGCCTGGGGTGGGCAGATTGCCCAGCAGTACTTGAATGACAATGACCTGCAGCCCGATGTCCTCTGTAATCTGG  >  NC_002947/3766026‑3766321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.